Evidence map›Paper›PMID 30422341›Full record

ArticleThe Plant journal : for cell and molecular biology2019

Sunflower resistance to multiple downy mildew pathotypes revealed by recognition of conserved effectors of the oomycete Plasmopara halstedii.

Yann Pecrix, Luis Buendia, Charlotte Penouilh-Suzette, Maude Maréchaux, Ludovic Legrand, Olivier Bouchez, David Rengel, Jérôme Gouzy, Ludovic Cottret, Felicity Vear and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
10.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
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  5. Review
  6. Review
  7. Article
  8. Genome-Wide Characterization of Effector Protein-Encoding Genes inJournal of fungi (Basel, Switzerland) · 2023
    Article
  9. Introgression and targeting of the PlTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Characterization and mapping of a downy mildew resistance gene,Molecular breeding : new strategies in plant improvement · 2022
    Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. High-Density Mapping and Candidate Gene Analysis ofInternational journal of molecular sciences · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Yann PecrixLIPM Laboratoire des Interactions Plantes-Microorganismes, Université de Toulouse, INRA, CNRS, F-31326, Castanet-Tolosan, France.ORCID 0000-0002-6537-3145
Luis BuendiaLIPM Laboratoire des Interactions Plantes-Microorganismes, Université de Toulouse, INRA, CNRS, F-31326, Castanet-Tolosan, France.
Charlotte Penouilh-SuzetteLIPM Laboratoire des Interactions Plantes-Microorganismes, Université de Toulouse, INRA, CNRS, F-31326, Castanet-Tolosan, France.
Maude MaréchauxLIPM Laboratoire des Interactions Plantes-Microorganismes, Université de Toulouse, INRA, CNRS, F-31326, Castanet-Tolosan, France.
Ludovic LegrandLIPM Laboratoire des Interactions Plantes-Microorganismes, Université de Toulouse, INRA, CNRS, F-31326, Castanet-Tolosan, France.
Olivier BouchezGeT-PlaGe, US INRA 1426, INRA Auzeville, F-31326, Castanet-Tolosan Cedex, France.
David RengelLIPM Laboratoire des Interactions Plantes-Microorganismes, Université de Toulouse, INRA, CNRS, F-31326, Castanet-Tolosan, France.
Jérôme GouzyLIPM Laboratoire des Interactions Plantes-Microorganismes, Université de Toulouse, INRA, CNRS, F-31326, Castanet-Tolosan, France.
Ludovic CottretLIPM Laboratoire des Interactions Plantes-Microorganismes, Université de Toulouse, INRA, CNRS, F-31326, Castanet-Tolosan, France.
Felicity VearINRA, UMR 1095, F-63000, Clermont-Ferrand, France.
Laurence GodiardLIPM Laboratoire des Interactions Plantes-Microorganismes, Université de Toulouse, INRA, CNRS, F-31326, Castanet-Tolosan, France.ORCID 0000-0001-5332-092X
Centre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Over the last 40 years, new sunflower downy mildew isolates (Plasmopara halstedii) have overcome major gene resistances in sunflower, requiring the identification of additional and possibly more durable broad-spectrum resistances. Here, 354 RXLR effectors defined in silico from our new genomic data were classified in a network of 40 connected components sharing conserved protein domains. Among 205 RXLR effector genes encoding conserved proteins in 17 P. halstedii pathotypes of varying virulence, we selected 30 effectors that were expressed during plant infection as potentially essential genes to target broad-spectrum resistance in sunflower. The transient expression of the 30 core effectors in sunflower and in Nicotiana benthamiana leaves revealed a wide diversity of targeted subcellular compartments, including organelles not so far shown to be targeted by oomycete effectors such as chloroplasts and processing bodies. More than half of the 30 core effectors were able to suppress pattern-triggered immunity in N. benthamiana, and five of these induced hypersensitive responses (HR) in sunflower broad-spectrum resistant lines. HR triggered by PhRXLRC01 co-segregated with Pl22 resistance in F3 populations and both traits localized in 1.7 Mb on chromosome 13 of the sunflower genome. Pl22 resistance was physically mapped on the sunflower genome recently sequenced, unlike all the other downy mildew resistances published so far. PhRXLRC01 and Pl22 are proposed as an avirulence/resistance gene couple not previously described in sunflower. Core effector recognition is a successful strategy to accelerate broad-spectrum resistance gene identification in complex crop genomes such as sunflower.

Indexed as

Chromosome MappingDisease ResistanceGenotypeHelianthusOomycetesPlant DiseasesVirulencebroad-spectrum resistanceHelianthus annuus (cultivated sunflower)oomycetepathogen effector networkpattern-triggered immunity suppressionphysical mapping of sunflower resistance genePlasmopara halstediiRXLR effectorsubcellular localization

Identifiers

PMID30422341
PMCPMC6849628
OpenAlexW2901899349

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.