Evidence map›Paper›PMID 30420722›Full record

ArticleScientific reports2018

Deciphering the immune microenvironment of a tissue by digital imaging and cognition network.

A Lopès, Al H Cassé, E Billard, E Boulcourt-Sambou, G Roche, C Larois, N Barnich, S Naimi, M Bonnet, B Dumas

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Therapeutic Efficacy ofPharmaceuticals (Basel, Switzerland) · 2024
    Article
  3. Article
  4. Review
  5. Digital pathology and artificial intelligence in translational medicine and clinical practice.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2022
    Review
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

A LopèsClermont Université, UMR 1071 Inserm/Université Clermont-Auvergne, 63000, Clermont-Ferrand, France.
Al H CasséHistopathology and Bio-Imaging Group, Sanofi R&D, 94400, Vitry-Sur-Seine, France. Alhassan.Casse2@sanofi.com.
E BillardClermont Université, UMR 1071 Inserm/Université Clermont-Auvergne, 63000, Clermont-Ferrand, France.
E Boulcourt-SambouHistopathology and Bio-Imaging Group, Sanofi R&D, 94400, Vitry-Sur-Seine, France.
G RocheClermont Université, UMR 1071 Inserm/Université Clermont-Auvergne, 63000, Clermont-Ferrand, France.
C LaroisHistopathology and Bio-Imaging Group, Sanofi R&D, 94400, Vitry-Sur-Seine, France.
N BarnichClermont Université, UMR 1071 Inserm/Université Clermont-Auvergne, 63000, Clermont-Ferrand, France.
S NaimiHistopathology and Bio-Imaging Group, Sanofi R&D, 94400, Vitry-Sur-Seine, France.
M BonnetClermont Université, UMR 1071 Inserm/Université Clermont-Auvergne, 63000, Clermont-Ferrand, France.ORCID http://orcid.org/0000-0003-3629-7267
B DumasResearch Biologics, Sanofi R&D, 94400, Vitry-Sur-Seine, France. Bruno.Dumas@sanofi.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Evidence has highlighted the importance of immune cells in various gut disorders. Both the quantification and localization of these cells are essential to the understanding of the complex mechanisms implicated in these pathologies. Even if quantification can be assessed (e.g., by flow cytometry), simultaneous cell localization and quantification of whole tissues remains technically challenging. Here, we describe the use of a computer learning-based algorithm created in the Tissue Studio interface that allows for a semi-automated, robust and rapid quantitative analysis of immunofluorescence staining on whole colon sections according to their distribution in different tissue areas. Indeed, this algorithm was validated to characterize gut immune microenvironment. Its application to the preclinical colon cancer APC

Indexed as

AlgorithmsAnimalsColonColonic NeoplasmsFluorescent Antibody TechniqueIntestinal MucosaMiceTumor Microenvironment

Identifiers

PMID30420722
PMCPMC6232093

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.