Evidence map›Paper›PMID 30420649›Full record

ArticleNature genetics2019

Subtype-specific regulatory network rewiring in acute myeloid leukemia.

Salam A Assi, Maria Rosaria Imperato, Daniel J L Coleman, Anna Pickin, Sandeep Potluri, Anetta Ptasinska, Paulynn Suyin Chin, Helen Blair, Pierre Cauchy, Sally R James and 14 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 131 papers.

0numbers the graph read from it
0cells of the map it votes in
131citing papers in PubMed
12.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

131 citing papers in PubMed, 195 citations in OpenAlex.

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71 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

24 authors at 9 institutions in 2 countries.

Salam A Assi *Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK.
Maria Rosaria Imperato *Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK.
Daniel J L Coleman *Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK.
Anna PickinInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK.
Sandeep PotluriInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK.ORCID http://orcid.org/0000-0001-7229-5344
Anetta PtasinskaInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK.
Paulynn Suyin ChinInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK.
Helen BlairNorthern Institute for Cancer Research, University of Newcastle, Newcastle, UK.
Pierre CauchyInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK.ORCID http://orcid.org/0000-0002-0659-0799
Sally R JamesSection of Experimental Haematology, Leeds Institute for Molecular Medicine, University of Leeds, Leeds, UK.
Joaquin Zacarias-CabezaInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK.
L Niall GildingInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK.ORCID http://orcid.org/0000-0002-3540-0712
Andrew BeggsInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK.ORCID http://orcid.org/0000-0003-0784-2967
Sam ClokieWest Midlands Regional Genetics Laboratory, Birmingham Women's NHS Foundation Trust, Birmingham, UK.
Justin C LokeInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK.
Phil JenkinCMT Laboratory NHS Blood & Transplant, Edgbaston, Birmingham, UK.
Ash UddinCMT Laboratory NHS Blood & Transplant, Edgbaston, Birmingham, UK.
Ruud DelwelDepartment of Hematology, Erasmus University Medical Center, Rotterdam, The Netherlands.
Stephen J RichardsHaematological Malignancy Diagnostic Service, St. James's University Hospital, Leeds, UK.
Manoj RaghavanInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK.
Michael J GriffithsWest Midlands Regional Genetics Laboratory, Birmingham Women's NHS Foundation Trust, Birmingham, UK.ORCID http://orcid.org/0000-0001-5112-2882
Olaf HeidenreichNorthern Institute for Cancer Research, University of Newcastle, Newcastle, UK.
Peter N CockerillInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK. p.n.cockerill@bham.ac.uk.ORCID http://orcid.org/0000-0002-4410-8174
Constanze BoniferInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham, UK. c.bonifer@bham.ac.uk.ORCID http://orcid.org/0000-0002-4267-0825
University of Birmingham · GBNHS Blood and Transplant · GBCancer Research UK Clinical Trials Unit · GBErasmus MC · NLNewcastle University · GBPrincess Máxima Center · NLQueen Elizabeth Hospital Birmingham · GBSt James's University Hospital · GBUniversity of Leeds · GB

Funding

Cancer Research UK 23389Medical Research Council MR/M009157/1Medical Research Council MR/P019609/1
6 · The paper itself

Abstract

Acute myeloid leukemia (AML) is a heterogeneous disease caused by a variety of alterations in transcription factors, epigenetic regulators and signaling molecules. To determine how different mutant regulators establish AML subtype-specific transcriptional networks, we performed a comprehensive global analysis of cis-regulatory element activity and interaction, transcription factor occupancy and gene expression patterns in purified leukemic blast cells. Here, we focused on specific subgroups of subjects carrying mutations in genes encoding transcription factors (RUNX1, CEBPα), signaling molecules (FTL3-ITD, RAS) and the nuclear protein NPM1). Integrated analysis of these data demonstrates that each mutant regulator establishes a specific transcriptional and signaling network unrelated to that seen in normal cells, sustaining the expression of unique sets of genes required for AML growth and maintenance.

Indexed as

AdultAgedAged, 80 and overFemaleGene Expression Regulation, LeukemicGene Regulatory NetworksHumansLeukemia, Myeloid, AcuteMaleMiddle AgedNucleophosminSignal TransductionTranscription FactorsYoung AdultNPM1 protein, humanNucleophosminTranscription Factors

Identifiers

PMID30420649
PMCPMC6330064
OpenAlexW2900205062

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.