Evidence map›Paper›PMID 30419810›Full record

ArticleBMC evolutionary biology2018

The crowns have eyes: multiple opsins found in the eyes of the crown-of-thorns starfish Acanthaster planci.

Elijah K Lowe, Anders L Garm, Esther Ullrich-Lüter, Claudia Cuomo, Maria I Arnone

Open access · goldAbstract read
In one paragraph

Article in BMC evolutionary biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 20 citations in OpenAlex.

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  10. Development of a larval nervous system in the sea urchin.Current topics in developmental biology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

Elijah K LoweBiology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, Villa comunale, 80122, Naples, Italy.
Anders L GarmMarine Biological Section, University of Copenhagen, Copenhagen, Denmark.
Esther Ullrich-LüterMuseum für Naturkunde, Berlin, Germany.
Claudia CuomoBiology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, Villa comunale, 80122, Naples, Italy.
Maria I ArnoneBiology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, Villa comunale, 80122, Naples, Italy. miarnone@szn.it.ORCID 0000-0002-9012-7624
Stazione Zoologica Anton Dohrn · ITMuseum für Naturkunde · DEUniversity of Copenhagen · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundOpsins are G protein-coupled receptors used for both visual and non-visual photoreception, and these proteins evolutionarily date back to the base of the bilaterians. In the current sequencing age, phylogenomic analysis has proven to be a powerful tool, facilitating the increase in knowledge about diversity within the opsin subclasses and, so far, at least nine types of opsins have been identified. Within echinoderms, opsins have been studied in Echinoidea and Ophiuroidea, which do not possess proper image forming eyes, but rather widely dispersed dermal photoreceptors. However, most species of Asteroidea, the starfish, possess true eyes and studying them will shed light on the diversity of opsin usage within echinoderms and help resolve the evolutionary history of opsins.

resultsUsing high-throughput RNA sequencing, we have sequenced and analyzed the transcriptomes of different Acanthaster planci tissue samples: eyes, radial nerve, tube feet and a mixture of tissues from other organs. At least ten opsins were identified, and eight of them were found significantly differentially expressed in both eyes and radial nerve, with R-opsin being the most highly expressed in the eye.

conclusionThis study provides new important insight into the involvement of opsins in visual and nonvisual photoreception. Of relevance, we found the first indication of an r-opsin photopigment expressed in a well-developed visual eye in a deuterostome animal. Additionally, we provided tissue specific A. planci transcriptomes that will aid in future Evo Devo studies.

Indexed as

Amino Acid MotifsAnimalsBase SequenceBayes TheoremBiological EvolutionCiliaEyeGene Expression RegulationOpsinsPhylogenyStarfishOpsinsAsteroideaEchinodermEvolutionPhotoreceptorsTranscriptomicsVision

Identifiers

PMID30419810
PMCPMC6233551
OpenAlexW2953213025

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.