Evidence map›Paper›PMID 30419011›Full record

ArticlePLoS genetics2018

Function and regulation of the Caenorhabditis elegans Rab32 family member GLO-1 in lysosome-related organelle biogenesis.

Caitlin Morris, Olivia K Foster, Simran Handa, Kimberly Peloza, Laura Voss, Hannah Somhegyi, Youli Jian, My Van Vo, Marie Harp, Fiona M Rambo and 2 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 37 citations in OpenAlex.

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  11. Single-tissue proteomics inProceedings of the National Academy of Sciences of the United States of America · 2024
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  12. Lysosome-related organelles contain an expansion compartment that mediates delivery of zinc transporters to promote homeostasis.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  14. WAVE facilitates polarized E-cadherin transport.Molecular biology of the cell · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Caitlin MorrisDepartment of Biology, Lewis & Clark College, Portland, Oregon, United States of America.
Olivia K FosterDepartment of Biology, Lewis & Clark College, Portland, Oregon, United States of America.
Simran HandaDepartment of Biology, Lewis & Clark College, Portland, Oregon, United States of America.
Kimberly PelozaDepartment of Biology, Lewis & Clark College, Portland, Oregon, United States of America.
Laura VossDepartment of Biology, Lewis & Clark College, Portland, Oregon, United States of America.
Hannah SomhegyiDepartment of Biology, Lewis & Clark College, Portland, Oregon, United States of America.
Youli JianState Key Laboratory of Molecular and Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
My Van VoDepartment of Biology, Lewis & Clark College, Portland, Oregon, United States of America.
Marie HarpDepartment of Biology, Lewis & Clark College, Portland, Oregon, United States of America.
Fiona M RamboDepartment of Biology, Lewis & Clark College, Portland, Oregon, United States of America.
Chonglin YangState Key Laboratory of Molecular and Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
Greg J HermannDepartment of Biology, Lewis & Clark College, Portland, Oregon, United States of America.ORCID 0000-0002-0278-6356
Lewis & Clark College · USChinese Academy of Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cell type-specific modifications of conventional endosomal trafficking pathways lead to the formation of lysosome-related organelles (LROs). C. elegans gut granules are intestinally restricted LROs that coexist with conventional degradative lysosomes. The formation of gut granules requires the Rab32 family member GLO-1. We show that the loss of glo-1 leads to the mistrafficking of gut granule proteins but does not significantly alter conventional endolysosome biogenesis. GLO-3 directly binds to CCZ-1 and they both function to promote the gut granule association of GLO-1, strongly suggesting that together, GLO-3 and CCZ-1 activate GLO-1. We found that a point mutation in GLO-1 predicted to spontaneously activate, and function independently of it guanine nucleotide exchange factor (GEF), localizes to gut granules and partially restores gut granule protein localization in ccz-1(-) and glo-3(-) mutants. CCZ-1 forms a heterodimeric complex with SAND-1(MON1), which does not function in gut granule formation, to activate RAB-7 in trafficking pathways to conventional lysosomes. Therefore, our data suggest a model whereby the function of a Rab GEF can be altered by subunit exchange. glo-3(-) mutants, which retain low levels of GLO-3 activity, generate gut granules that lack GLO-1 and improperly accumulate RAB-7 in a SAND-1 dependent process. We show that GLO-1 and GLO-3 restrict the distribution of RAB-7 to conventional endolysosomes, providing insights into the segregation of pathways leading to conventional lysosomes and LROs.

Indexed as

AnimalsAnimals, Genetically ModifiedCaenorhabditis elegansCaenorhabditis elegans ProteinsCytoplasmic GranulesDigestive SystemGenes, HelminthLysosomesMutationOrganelle BiogenesisProtein Interaction Domains and Motifsrab GTP-Binding ProteinsVesicular Transport ProteinsCaenorhabditis elegans ProteinsCCZ-1 protein, C elegansGlo-1 protein, C elegansrab GTP-Binding ProteinsVesicular Transport Proteins

Identifiers

PMID30419011
PMCPMC6268011
OpenAlexW2901361513

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.