Evidence map›Paper›PMID 30418970›Full record

ArticlePLoS genetics2018

Identification of Elg1 interaction partners and effects on post-replication chromatin re-formation.

Vamsi K Gali, David Dickerson, Yuki Katou, Katsunori Fujiki, Katsuhiko Shirahige, Tom Owen-Hughes, Takashi Kubota, Anne D Donaldson

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Vamsi K GaliInstitute of Medical Sciences, University of Aberdeen, Foresterhill, Aberdeen, Scotland, United Kingdom.
David DickersonCentre for Gene Regulation and Expression, University of Dundee, Dundee, Scotland, United Kingdom.
Yuki KatouResearch Center for Epigenetic Disease, Institute of Molecular and Cellular Biosciences, University of Tokyo, Tokyo, Japan.
Katsunori FujikiResearch Center for Epigenetic Disease, Institute of Molecular and Cellular Biosciences, University of Tokyo, Tokyo, Japan.
Katsuhiko ShirahigeResearch Center for Epigenetic Disease, Institute of Molecular and Cellular Biosciences, University of Tokyo, Tokyo, Japan.
Tom Owen-HughesCentre for Gene Regulation and Expression, University of Dundee, Dundee, Scotland, United Kingdom.
Takashi KubotaInstitute of Medical Sciences, University of Aberdeen, Foresterhill, Aberdeen, Scotland, United Kingdom.ORCID 0000-0001-7316-5381
Anne D DonaldsonInstitute of Medical Sciences, University of Aberdeen, Foresterhill, Aberdeen, Scotland, United Kingdom.ORCID 0000-0001-7842-8136
The University of Tokyo · JPUniversity of Aberdeen · GBUniversity of Dundee · GB

Funding

Biotechnology and Biological Sciences Research Council BB/K006304/1Cancer Research UK 19059Cancer Research UK A19059Wellcome TrustWellcome Trust 095062
6 · The paper itself

Abstract

Elg1, the major subunit of a Replication Factor C-like complex, is critical to ensure genomic stability during DNA replication, and is implicated in controlling chromatin structure. We investigated the consequences of Elg1 loss for the dynamics of chromatin re-formation following DNA replication. Measurement of Okazaki fragment length and the micrococcal nuclease sensitivity of newly replicated DNA revealed a defect in nucleosome organization in the absence of Elg1. Using a proteomic approach to identify Elg1 binding partners, we discovered that Elg1 interacts with Rtt106, a histone chaperone implicated in replication-coupled nucleosome assembly that also regulates transcription. A central role for Elg1 is the unloading of PCNA from chromatin following DNA replication, so we examined the relative importance of Rtt106 and PCNA unloading for chromatin reassembly following DNA replication. We find that the major cause of the chromatin organization defects of an ELG1 mutant is PCNA retention on DNA following replication, with Rtt106-Elg1 interaction potentially playing a contributory role.

Indexed as

Carrier ProteinsChromatinDNA ReplicationGenes, FungalGenomic InstabilityMolecular ChaperonesMutationProliferating Cell Nuclear AntigenProtein BindingProteomicsReplication Protein CSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsCarrier ProteinsChromatinElg1 protein, S cerevisiaeMolecular ChaperonesPOL30 protein, S cerevisiaeProliferating Cell Nuclear AntigenReplication Protein CRtt106 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID30418970
PMCPMC6258251
OpenAlexW2901966574

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.