Evidence map›Paper›PMID 30418701›Full record

ArticleJournal of applied clinical medical physics2019

A study of positioning orientation effect on segmentation accuracy using convolutional neural networks for rectal cancer.

Kuo Men, Pamela Boimel, James Janopaul-Naylor, Chingyun Cheng, Haoyu Zhong, Mi Huang, Huaizhi Geng, Yong Fan, John P Plastaras, Edgar Ben-Josef and 1 more

Abstract read
In one paragraph

Article in Journal of applied clinical medical physics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. How to develop a meaningful radiomic signature for clinical use in oncologic patients.Cancer imaging : the official publication of the International Cancer Imaging Society · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Kuo MenUniversity of Pennsylvania, Philadelphia, PA, USA.
Pamela BoimelUniversity of Pennsylvania, Philadelphia, PA, USA.
James Janopaul-NaylorUniversity of Pennsylvania, Philadelphia, PA, USA.
Chingyun ChengUniversity of Pennsylvania, Philadelphia, PA, USA.
Haoyu ZhongUniversity of Pennsylvania, Philadelphia, PA, USA.
Mi HuangUniversity of Pennsylvania, Philadelphia, PA, USA.
Huaizhi GengUniversity of Pennsylvania, Philadelphia, PA, USA.
Yong FanUniversity of Pennsylvania, Philadelphia, PA, USA.
John P PlastarasUniversity of Pennsylvania, Philadelphia, PA, USA.
Edgar Ben-JosefUniversity of Pennsylvania, Philadelphia, PA, USA.
Ying XiaoUniversity of Pennsylvania, Philadelphia, PA, USA.

Funding

IROC: Enhancing local enrolling site radiological data capture capabilities for NCTN trialsU24CA180803 · NCI · AMERICAN COLLEGE OF RADIOLOGY · PI Thomas J. FitzGerald, MICHAEL V KNOPP · 2014 to 2026
$116.2M
Learning radiomic signatures to early predict response of rectal cancer patients to neoadjuvant chemoradiation therapyR21CA223358 · NCI · UNIVERSITY OF PENNSYLVANIA · PI FAN, YONG · 2018 to 2019
$380k
National Cancer Institute (NCI) U24CA180803 (IROC) and CA223358NCI NIH HHS R21 CA223358NCI NIH HHS U24 CA180803
6 · The paper itself

Abstract

purposeConvolutional neural networks (CNN) have greatly improved medical image segmentation. A robust model requires training data can represent the entire dataset. One of the differing characteristics comes from variability in patient positioning (prone or supine) for radiotherapy. In this study, we investigated the effect of position orientation on segmentation using CNN.

methodsData of 100 patients (50 in supine and 50 in prone) with rectal cancer were collected for this study. We designed three sets of experiments for comparison: (a) segmentation using the model trained with data from the same orientation; (b) segmentation using the model trained with data from the opposite orientation; (c) segmentation using the model trained with data from both orientations. We performed fivefold cross-validation. The performance was evaluated on segmentation of the clinical target volume (CTV), bladder, and femurs with Dice similarity coefficient (DSC) and Hausdorff distance (HD).

resultsCompared with models trained on cases positioned in the same orientation, the models trained with cases positioned in the opposite orientation performed significantly worse (P < 0.05) on CTV and bladder segmentation, but had comparable accuracy for femurs (P > 0.05). The average DSC values were 0.74 vs 0.84, 0.85 vs 0.88, and 0.91 vs 0.91 for CTV, bladder, and femurs, respectively. The corresponding HD values (mm) were 16.6 vs 14.6, 8.4 vs 8.1, and 6.3 vs 6.3, respectively. The models trained with data from both orientations have comparable accuracy (P > 0.05), with average DSC of 0.84, 0.88, and 0.91 and HD of 14.4, 8.1, and 6.3, respectively.

conclusionsOrientation affects the accuracy for CTV and bladder, but has negligible effect on the femurs. The model trained from data combining both orientations performs as well as a model trained with data from the same orientation for all the organs. These observations can offer guidance on the choice of training data for accurate segmentation.

Indexed as

Neural Networks, ComputerHumansOrgans at RiskPatient PositioningProne PositionRadiotherapy DosageRadiotherapy, Intensity-ModulatedRadiotherapy Planning, Computer-AssistedRectal NeoplasmsSupine Positionconvolutional neural networksdeep learningpositioning orientationrectal cancer radiotherapysegmentation

Identifiers

PMID30418701
PMCPMC6333147

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.