Evidence map›Paper›PMID 30417877›Full record

ArticleJournal of visualized experiments : JoVE2018

A Loop-mediated Isothermal Amplification (LAMP) Assay for Rapid Identification of Bemisia tabaci.

Simon Blaser, Hanspeter Diem, Andreas von Felten, Morgan Gueuning, Michael Andreou, Neil Boonham, Jennifer Tomlinson, Pie Müller, Jürg Utzinger, Beatrice Frey and 2 more

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In one paragraph

Article in Journal of visualized experiments : JoVE, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Biology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Simon BlaserDepartment of Method Development and Analytics, Agroscope; Swiss Tropical and Public Health Institute; University of Basel; simon.blaser@agroscope.admin.ch.
Hanspeter DiemSwiss Federal Plant Protection Service, Federal Office for Agriculture.
Andreas von FeltenSwiss Federal Plant Protection Service, Federal Office for Agriculture.
Morgan GueuningDepartment of Method Development and Analytics, Agroscope.
Michael AndreouOptiGene Limited.
Neil BoonhamFera Science Limited; School of Natural and Environmental Sciences, Newcastle University.
Jennifer TomlinsonFera Science Limited.
Pie MüllerSwiss Tropical and Public Health Institute; University of Basel.
Jürg UtzingerSwiss Tropical and Public Health Institute; University of Basel.
Beatrice FreyDepartment of Method Development and Analytics, Agroscope.
Jürg E FreyDepartment of Method Development and Analytics, Agroscope.
Andreas BühlmannDepartment of Plants and Plant Products, Agroscope.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The whitefly Bemisia tabaci (Gennadius) is an invasive pest of considerable importance, affecting the production of vegetable and ornamental crops in many countries around the world. Severe yield losses are caused by direct feeding, and even more importantly, also by the transmission of more than 100 harmful plant pathogenic viruses. As for other invasive pests, increased international trade facilitates the dispersal of B. tabaci to areas beyond its native range. Inspections of plant import products at points of entry such as seaports and airports are, therefore, seen as an important prevention measure. However, this last line of defense against pest invasions is only effective if rapid identification methods for suspicious insect specimens are readily available. Because the morphological differentiation between the regulated B. tabaci and close relatives without quarantine status is difficult for non-taxonomists, a rapid molecular identification assay based on the loop-mediated isothermal amplification (LAMP) technology has been developed. This publication reports the detailed protocol of the novel assay describing rapid DNA extraction, set-up of the LAMP reaction, as well as interpretation of its read-out, which allows identifying B. tabaci specimens within one hour. Compared to existing protocols for the detection of specific B. tabaci biotypes, the developed method targets the whole B. tabaci species complex in one assay. Moreover the assay is designed to be applied on-site by plant health inspectors with minimal laboratory training directly at points of entry. Thorough validation performed under laboratory and on-site conditions demonstrates that the reported LAMP assay is a rapid and reliable identification tool, improving the management of B. tabaci.

Indexed as

AnimalsHemipteraLaboratoriesNucleic Acid Amplification TechniquesTime Factors

Identifiers

PMID30417877
PMCPMC6235616

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.