Evidence map›Paper›PMID 30417166›Full record

ArticlePlant direct2018

A family of small, cyclic peptides buried in preproalbumin since the Eocene epoch.

Mark F Fisher, Jingjing Zhang, Nicolas L Taylor, Mark J Howard, Oliver Berkowitz, Aleksandra W Debowski, Bahar Behsaz, James Whelan, Pavel A Pevzner, Joshua S Mylne

Open access · goldAbstract read
In one paragraph

Article in Plant direct, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Plant derived cyclic peptides.Biochemical Society transactions · 2021
    Review
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Mark F FisherThe University of Western Australia, School of Molecular Sciences, 35 Stirling Highway, Crawley, Perth 6009, Australia.
Jingjing ZhangThe University of Western Australia, School of Molecular Sciences, 35 Stirling Highway, Crawley, Perth 6009, Australia.
Nicolas L TaylorThe University of Western Australia, School of Molecular Sciences, 35 Stirling Highway, Crawley, Perth 6009, Australia.
Mark J HowardThe University of Western Australia, School of Molecular Sciences, 35 Stirling Highway, Crawley, Perth 6009, Australia.
Oliver BerkowitzDepartment of Animal, Plant and Soil Sciences, School of Life Sciences & ARC Centre of Excellence in Plant Energy Biology, AgriBio, The Centre for AgriBioscience, La Trobe University, Bundoora 3086, VIC, Australia.
Aleksandra W DebowskiThe University of Western Australia, School of Molecular Sciences, 35 Stirling Highway, Crawley, Perth 6009, Australia.
Bahar BehsazDepartment of Computer Science & Engineering, University of California, 9500 Gilman Drive, La Jolla, San Diego, CA 92093-0404, USA.
James WhelanDepartment of Animal, Plant and Soil Sciences, School of Life Sciences & ARC Centre of Excellence in Plant Energy Biology, AgriBio, The Centre for AgriBioscience, La Trobe University, Bundoora 3086, VIC, Australia.
Pavel A PevznerDepartment of Computer Science & Engineering, University of California, 9500 Gilman Drive, La Jolla, San Diego, CA 92093-0404, USA.
Joshua S MylneThe University of Western Australia, School of Molecular Sciences, 35 Stirling Highway, Crawley, Perth 6009, Australia.
University of Western Australia · AUARC Centre of Excellence in Plant Energy Biology · AUUniversity of California, San Diego · USLa Trobe University · AU

Funding

TrainingP41GM103484 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PEVZNER, PAVEL A · 2012 to 2018
$8.7M
NIGMS NIH HHS P41 GM103484
6 · The paper itself

Abstract

Orbitides are cyclic ribosomally-synthesized and post-translationally modified peptides (RiPPs) from plants; they consist of standard amino acids arranged in an unbroken chain of peptide bonds. These cyclic peptides are stable and range in size and topologies making them potential scaffolds for peptide drugs; some display valuable biological activities. Recently two orbitides whose sequences were buried in those of seed storage albumin precursors were said to represent the first observable step in the evolution of larger and hydrophilic bicyclic peptides. Here, guided by transcriptome data, we investigated peptide extracts of 40 species specifically for the more hydrophobic orbitides and confirmed 44 peptides by tandem mass spectrometry, as well as obtaining solution structures for four of them by NMR. Acquiring transcriptomes from the phylogenetically important Corymboideae family confirmed the precursor genes for the peptides (called

Indexed as

asparaginyl endopeptidaseAsteraceaecyclic peptideorbitideseed storage albumin

Identifiers

PMID30417166
PMCPMC6223261
OpenAlexW2790488138

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.