Evidence map›Paper›PMID 30416039›Full record

ArticleStructure (London, England : 1993)2019

Defining a Canonical Ligand-Binding Pocket in the Orphan Nuclear Receptor Nurr1.

Ian Mitchelle S de Vera, Paola Munoz-Tello, Jie Zheng, Venkatasubramanian Dharmarajan, David P Marciano, Edna Matta-Camacho, Pankaj Kumar Giri, Jinsai Shang, Travis S Hughes, Mark Rance and 2 more

Open access · greenAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 1 pooled it
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 1 synthesis or guideline pooled it, 61 citations in OpenAlex.

  1. International journal of molecular sciences · 2024
    Pooled it
  2. Article
  3. Article
  4. Article
  5. Regulation ofInternational journal of molecular sciences · 2025
    Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Integrative analysis reveals structural basis for transcription activation of Nurr1 and Nurr1-RXRα heterodimer.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  14. NURR1 expression regulates retinal pigment epithelial-mesenchymal transition and age-related macular degeneration phenotypes.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  15. Review
  16. Nurr1 Modulation Mediates Neuroprotective Effects of Statins.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2022
    Article
  17. Article
  18. Article
  19. Two novel heterozygous truncating variants inFrontiers in neuroscience · 2022
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Ian Mitchelle S de VeraDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, FL 33458, USA.
Paola Munoz-TelloDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, FL 33458, USA.
Jie ZhengDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, FL 33458, USA.
Venkatasubramanian DharmarajanDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, FL 33458, USA.
David P MarcianoDepartment of Molecular Medicine, The Scripps Research Institute, Jupiter, FL 33458, USA; Skaggs Graduate School of Chemical and Biological Sciences, The Scripps Research Institute, Jupiter, FL 33458, USA.
Edna Matta-CamachoDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, FL 33458, USA.
Pankaj Kumar GiriDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, FL 33458, USA.
Jinsai ShangDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, FL 33458, USA.
Travis S HughesDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, FL 33458, USA.
Mark RanceDepartment of Molecular Genetics, Biochemistry and Microbiology, University of Cincinnati, Cincinnati, OH 45267, USA.
Patrick R GriffinDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, FL 33458, USA; Department of Molecular Medicine, The Scripps Research Institute, Jupiter, FL 33458, USA.
Douglas J KojetinDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, FL 33458, USA; Department of Molecular Medicine, The Scripps Research Institute, Jupiter, FL 33458, USA. Electronic address: dkojetin@scripps.edu.
Scripps Research Institute · USUniversity of Cincinnati · US

Funding

Structural mechanism and function of endogenous ligands targeting orphan NR4A receptorsR01GM114420 · NIGMS · SCRIPPS FLORIDA · PI KOJETIN, DOUGLAS · 2015 to 2018
$1.5M
Connecting the functional effects of drugs to how they change PPAR gammaR00DK103116 · NIDDK · UNIVERSITY OF MONTANA · PI HUGHES, TRAVIS SHANE · 2016 to 2018
$727k
Structural Analysis of Corepressor Binding to PPARγF32DK108442 · NIDDK · SCRIPPS FLORIDA · PI BRUST, RICHARD JAMES · 2016 to 2018
$178k
NIDDK NIH HHS F32 DK108442NIDDK NIH HHS R00 DK103116NIGMS NIH HHS R01 GM114420
6 · The paper itself

Abstract

Nuclear receptor-related 1 protein (Nurr1/NR4A2) is an orphan nuclear receptor (NR) that is considered to function without a canonical ligand-binding pocket (LBP). A crystal structure of the Nurr1 ligand-binding domain (LBD) revealed no physical space in the conserved region where other NRs with solvent accessible apo-protein LBPs bind synthetic and natural ligands. Using solution nuclear magnetic resonance spectroscopy, hydrogen/deuterium exchange mass spectrometry, and molecular dynamics simulations, we show that the putative canonical Nurr1 LBP is dynamic with high solvent accessibility, exchanges between two or more conformations on the microsecond-to-millisecond timescale, and can expand from the collapsed crystallized conformation to allow binding of unsaturated fatty acids. These findings should stimulate future studies to probe the ligandability and druggability of Nurr1 for both endogenous and synthetic ligands, which could lead to new therapeutics for Nurr1-related diseases, including Parkinson's disease and schizophrenia.

Indexed as

Molecular Docking SimulationBinding SitesFatty Acids, UnsaturatedHumansLigandsMolecular Dynamics SimulationNuclear Receptor Subfamily 4, Group A, Member 2Protein BindingFatty Acids, UnsaturatedLigandsNR4A2 protein, humanNuclear Receptor Subfamily 4, Group A, Member 2dynamic pockethydrogen deuterium exchange mass spectrometryligand bindingmolecular dynamics simulationsNMR spectroscopyNR4A2Nurr1orphan nuclear receptorunsaturated fatty acids

Identifiers

PMID30416039
PMCPMC6318021
OpenAlexW2951366833

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.