Evidence map›Paper›PMID 30414346›Full record

ArticleInternational journal of cancer2019

Multigene panel sequencing of established and candidate melanoma susceptibility genes in a large cohort of Dutch non-CDKN2A/CDK4 melanoma families.

Thomas P Potjer, Sander Bollen, Anneliese J E M Grimbergen, Remco van Doorn, Nelleke A Gruis, Christi J van Asperen, Frederik J Hes, Nienke van der Stoep, Dutch Working Group for Clinical Oncogenetics

Open access · hybridAbstract read
In one paragraph

Article in International journal of cancer, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Review
  3. An overview of benefits and risks of chronic melanocortin-1 receptor activation.Journal of the European Academy of Dermatology and Venereology : JEADV · 2025
    Review
  4. Review
  5. Next-generation sequencing in dermatology.Frontiers in medicine · 2023
    Review
  6. Diagnostics ofDiagnostics (Basel, Switzerland) · 2022
    Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Non-canonical roles of canonical telomere binding proteins in cancers.Cellular and molecular life sciences : CMLS · 2021
    Review
  14. Review
  15. Article
  16. Disease risk scores for skin cancers.Nature communications · 2021
    Observational
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Thomas P PotjerDepartment of Clinical Genetics, Leiden University Medical Centre, Leiden, the Netherlands.ORCID 0000-0002-3831-6022
Sander BollenDepartment of Clinical Genetics, Leiden University Medical Centre, Leiden, the Netherlands.
Anneliese J E M GrimbergenDepartment of Clinical Genetics, Leiden University Medical Centre, Leiden, the Netherlands.
Remco van DoornDepartment of Dermatology, Leiden University Medical Centre, Leiden, the Netherlands.
Nelleke A GruisDepartment of Dermatology, Leiden University Medical Centre, Leiden, the Netherlands.
Christi J van AsperenDepartment of Clinical Genetics, Leiden University Medical Centre, Leiden, the Netherlands.
Frederik J HesDepartment of Clinical Genetics, Leiden University Medical Centre, Leiden, the Netherlands.
Nienke van der StoepDepartment of Clinical Genetics, Leiden University Medical Centre, Leiden, the Netherlands.
Dutch Working Group for Clinical Oncogenetics
Leiden University · NLLeiden University Medical Center · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Germline mutations in the major melanoma susceptibility gene CDKN2A explain genetic predisposition in only 10-40% of melanoma-prone families. In our study we comprehensively characterized 488 melanoma cases from 451 non-CDKN2A/CDK4 families for mutations in 30 established and candidate melanoma susceptibility genes using a custom-designed targeted gene panel approach. We identified (likely) pathogenic variants in established melanoma susceptibility genes in 18 families (n = 3 BAP1, n = 15 MITF p.E318K; diagnostic yield 4.0%). Among the three identified BAP1-families, there were no reported diagnoses of uveal melanoma or malignant mesothelioma. We additionally identified two potentially deleterious missense variants in the telomere maintenance genes ACD and TERF2IP, but none in the POT1 gene. MC1R risk variants were strongly enriched in our familial melanoma cohort compared to healthy controls (R variants: OR 3.67, 95% CI 2.88-4.68, p <0.001). Several variants of interest were also identified in candidate melanoma susceptibility genes, in particular rare (pathogenic) variants in the albinism gene OCA2 were repeatedly found. We conclude that multigene panel testing for familial melanoma is appropriate considering the additional 4% diagnostic yield in non-CDKN2A/CDK4 families. Our study shows that BAP1 and MITF are important genes to be included in such a diagnostic test.

Indexed as

Cohort StudiesCyclin-Dependent Kinase 4Cyclin-Dependent Kinase Inhibitor p16FemaleGenetic Predisposition to DiseaseGerm-Line MutationHumansLung NeoplasmsMaleMelanomaMesotheliomaMesothelioma, MalignantMicrophthalmia-Associated Transcription FactorUbiquitin ThiolesteraseCDK4 protein, humanCDKN2A protein, humanCyclin-Dependent Kinase 4Cyclin-Dependent Kinase Inhibitor p16Microphthalmia-Associated Transcription FactorUbiquitin ThiolesteraseBAP1candidate susceptibility genesfamilial melanomagene panel sequencinggenetic susceptibilityhigh-penetrance genesMITFOCA2

Identifiers

PMID30414346
PMCPMC6590189
OpenAlexW2900364135

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.