Evidence map›Paper›PMID 30414157›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2019

Following Transcriptome to Uncover FOXO Biological Functions.

Raymond Liang, Vijay Menon, Saghi Ghaffari

Open access · greenAbstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Raymond LiangDepartment of Cell, Developmental and Regenerative Biology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Vijay MenonDepartment of Cell, Developmental and Regenerative Biology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Saghi GhaffariDepartment of Cell, Developmental and Regenerative Biology, Icahn School of Medicine at Mount Sinai, New York, NY, USA. Saghi.Ghaffari@mssm.edu.
Icahn School of Medicine at Mount Sinai · US

Funding

(PQ5) Mitochondria in Leukemic Stem Cell Disease ProgressionR01CA205975 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI GHAFFARI, SAGHI · 2016 to 2025
$3.9M
Mitochondria in the Regulation of Terminal ErythropoiesisR01HL136255 · NHLBI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SAGHI GHAFFARI · 2017 to 2026
$3.8M
NCI NIH HHS R01 CA205975NHLBI NIH HHS R01 HL136255
6 · The paper itself

Abstract

Two and half million red blood cells (RBC) are generated every second in a healthy adult. The process of RBC production known as erythropoiesis requires a meticulous synchrony between signaling processes and the activity of many transcription factor complexes. FOXO3 is a transcription factor that is responsive to signaling processes and essential for the erythroid proliferation and maturation, RBC formation, and lifespan. Here, we discuss how using an integrated computational and experimental systems biology approach new and unanticipated FOXO3 functions in terminal erythropoiesis were uncovered. These combinatory approaches identified FOXO3 as a key regulator of terminal erythropoiesis. As a result, a new mode of FOXO3 participation in erythroid transcription complex formation has been proposed.

Indexed as

Gene Expression ProfilingGene Expression RegulationTranscriptomeAnimalsCell DifferentiationChromatin ImmunoprecipitationErythroblastsErythrocytesErythropoiesisForkhead Transcription FactorsHigh-Throughput Nucleotide SequencingMiceMitochondriaMitophagyReproducibility of ResultsForkhead Transcription FactorsEnucleationErythropoiesisFOXOFOXO3MitochondriaMitophagyRed blood cell (RBC)RNA sequencingTranscriptome

Identifiers

PMID30414157
PMCPMC6900592
OpenAlexW2899614342

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.