Evidence map›Paper›PMID 30413836›Full record

ArticleMicrobial ecology2019

Variations in Microbial Diversity and Metabolite Profiles of the Tropical Marine Sponge Xestospongia muta with Season and Depth.

Marcela Villegas-Plazas, Melissa L Wos-Oxley, Juan A Sanchez, Dietmar H Pieper, Olivier P Thomas, Howard Junca

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Microbial ecology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Article
  3. The unique and enigmatic spirochete symbiont of latrunculid sponges.bioRxiv : the preprint server for biology · 2024
    Article
  4. Article
  5. Article
  6. Review
  7. Intrahabitat Differences in Bacterial Communities Associated withApplied and environmental microbiology · 2022
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 4 countries.

Marcela Villegas-PlazasRG Microbial Ecology: Metabolism, Genomics & Evolution, Div Ecogenomics & Holobionts, Microbiomas Foundation, LT11A, Chía, 250008, Colombia.
Melissa L Wos-OxleyMicrobial Interactions and Processes Research Group, Helmholtz Centre for Infection Research, Braunschweig, Germany.
Juan A SanchezLaboratorio de Biología Molecular Marina (BIOMMAR), Departmento de Ciencias Biológicas, Universidad de los Andes, Bogotá, Colombia.
Dietmar H PieperMicrobial Interactions and Processes Research Group, Helmholtz Centre for Infection Research, Braunschweig, Germany.
Olivier P ThomasMarine Biodiscovery, School of Chemistry and Ryan Institute, National University of Ireland Galway (NUI Galway), University Road, Galway, H91 TK33, Ireland.
Howard JuncaRG Microbial Ecology: Metabolism, Genomics & Evolution, Div Ecogenomics & Holobionts, Microbiomas Foundation, LT11A, Chía, 250008, Colombia. info@howardjunca.com.ORCID http://orcid.org/0000-0003-4546-6229
Microbiomas Foundation · COHelmholtz Centre for Infection Research · DEOllscoil na Gaillimhe – University of Galway · IESouth Australian Museum · AUUniversidad de Los Andes · CO

Funding

EcosNord-Colciencias 652-2014Jóven Investigador - Colciencias JI-2012MAGICPAH KBBE-2009-245226Universidad de los Andes MSc scholarship
6 · The paper itself

Abstract

Xestospongia muta is among the most emblematic sponge species inhabiting coral reefs of the Caribbean Sea. Besides being the largest sponge species growing in the Caribbean, it is also known to produce secondary metabolites. This study aimed to assess the effect of depth and season on the symbiotic bacterial dynamics and major metabolite profiles of specimens of X. muta thriving in a tropical marine biome (Portobelo Bay, Panamá), which allow us to determine whether variability patterns are similar to those reported for subtropical latitudes. The bacterial assemblages were characterized using Illumina deep-sequencing and metabolomic profiles using UHPLC-DAD-ELSD from five depths (ranging 9-28 m) across two seasons (spring and autumn). Diverse symbiotic communities, representing 24 phyla with a predominance of Proteobacteria and Chloroflexi, were found. Although several thousands of OTUs were determined, most of them belong to the rare biosphere and only 23 to a core community. There was a significant difference between the structure of the microbial communities in respect to season (autumn to spring), with a further significant difference between depths only in autumn. This was partially mirrored in the metabolome profile, where the overall metabolite composition did not differ between seasons, but a significant depth gradient was observed in autumn. At the phyla level, Cyanobacteria, Firmicutes, Actinobacteria, and Spirochaete showed a mild-moderate correlation with the metabolome profile. The metabolomic profiles were mainly characterized by known brominated polyunsaturated fatty acids. This work presents findings about the composition and dynamics of the microbial assemblages of X. muta expanding and confirming current knowledge about its remarkable diversity and geographic variability as observed in this tropical marine biome.

Indexed as

MicrobiotaAnimalsBacteriaBacterial Physiological PhenomenaBiodiversityCaribbean RegionCoral ReefsPanamaPhylogenySeasonsSeawaterSymbiosisXestospongia16S rRNA geneDepth gradientHolobiontIllumina deep-sequencingMarine spongesMetabolomicsSeasonSymbiotic bacterial communitiesXestospongia muta

Identifiers

PMID30413836
OpenAlexW2900262660

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.