Evidence map›Paper›PMID 30412219›Full record

ArticleDatabase : the journal of biological databases and curation2017

Named entity linking of geospatial and host metadata in GenBank for advancing biomedical research.

Tasnia Tahsin, Davy Weissenbacher, Demetrius Jones-Shargani, Daniel Magee, Matteo Vaiente, Graciela Gonzalez, Matthew Scotch

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Database : the journal of biological databases and curation, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Bi-directional Recurrent Neural Network Models for Geographic Location Extraction in Biomedical Literature.Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Tasnia TahsinDepartment of Biomedical Informatics, Arizona State University, 13212 E Shea Blvd, Scottsdale, AZ 85259, USA.
Davy WeissenbacherDepartment of Biomedical Informatics, Arizona State University, 13212 E Shea Blvd, Scottsdale, AZ 85259, USA.
Demetrius Jones-SharganiBiodesign Center for Environmental Health Engineering, Arizona State University 781 E, Terrace Mall Tempe, AZ 85281 USA.
Daniel MageeDepartment of Biomedical Informatics, Arizona State University, 13212 E Shea Blvd, Scottsdale, AZ 85259, USA.
Matteo VaienteDepartment of Biomedical Informatics, Arizona State University, 13212 E Shea Blvd, Scottsdale, AZ 85259, USA.
Graciela GonzalezDepartment of Biomedical Informatics, Arizona State University, 13212 E Shea Blvd, Scottsdale, AZ 85259, USA.
Matthew ScotchDepartment of Biomedical Informatics, Arizona State University, 13212 E Shea Blvd, Scottsdale, AZ 85259, USA.
Center for Environmental Health · USArizona State University · US

Funding

Tracking Evolution and Spread of Viral Genomes by Geospatial Observation ErrorR01AI117011 · NIAID · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI GONZALEZ HERNANDEZ, GRACIELA, SCOTCH, MATTHEW · 2016 to 2019
$1.9M
Merging Viral Genetics with Climate and Population Data for Zoonotic SurveillanceR01LM012080 · NLM · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI SCOTCH, MATTHEW · 2015 to 2017
$1.1M
NIAID NIH HHS R01 AI117011NLM NIH HHS R01 LM012080
6 · The paper itself

Abstract

database url: https://zodo.asu.edu/zoophydb/.

Identifiers

PMID30412219
PMCPMC6225896
OpenAlexW2786076794

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.