Evidence map›Paper›PMID 30412047›Full record

ArticleThe Journal of general virology2018

Detection of novel and recognized RNA viruses in mosquitoes from the Yucatan Peninsula of Mexico using metagenomics and characterization of their in vitro host ranges.

Jermilia Charles, Chandra S Tangudu, Stefanie L Hurt, Charlotte Tumescheit, Andrew E Firth, Julian E Garcia-Rejon, Carlos Machain-Williams, Bradley J Blitvich

Open access · greenAbstract read
In one paragraph

Article in The Journal of general virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
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  8. Entomo-virological surveillance of Flavivirus in mosquitoes in Yucatan State, Mexico.Revista do Instituto de Medicina Tropical de Sao Paulo · 2024
    Article
  9. Article
  10. Review
  11. Novel PutativeViruses · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Jermilia Charles1​Department of Veterinary Microbiology and Preventive Medicine, College of Veterinary Medicine, Iowa State University, Ames, Iowa, USA.
Chandra S Tangudu1​Department of Veterinary Microbiology and Preventive Medicine, College of Veterinary Medicine, Iowa State University, Ames, Iowa, USA.
Stefanie L Hurt1​Department of Veterinary Microbiology and Preventive Medicine, College of Veterinary Medicine, Iowa State University, Ames, Iowa, USA.
Charlotte Tumescheit2​Department of Pathology, University of Cambridge, Cambridge, UK.
Andrew E Firth2​Department of Pathology, University of Cambridge, Cambridge, UK.
Julian E Garcia-Rejon3​Laboratorio de Arbovirologia, Centro de Investigaciones Regionales 'Dr Hideyo Noguchi', Universidad Autónoma de Yucatán, Mérida, Yucatán, Mexico.
Carlos Machain-Williams3​Laboratorio de Arbovirologia, Centro de Investigaciones Regionales 'Dr Hideyo Noguchi', Universidad Autónoma de Yucatán, Mérida, Yucatán, Mexico.
Bradley J Blitvich1​Department of Veterinary Microbiology and Preventive Medicine, College of Veterinary Medicine, Iowa State University, Ames, Iowa, USA.
Iowa State University · USAutonomous University of Yucatán · MXUniversity of Cambridge · GB

Funding

Identification of the untranslated sequence elements and virus-host interactions that modulate flavivirus host-specificityR01AI114720 · NIAID · IOWA STATE UNIVERSITY · PI Bradley J Blitvich · 2015 to 2026
$2.9M
Genotypic and Phenotypic Analysis of West Nile virus, Yucatan Peninsula of MexicoR21AI067281 · NIAID · IOWA STATE UNIVERSITY · PI BLITVICH, BRADLEY J · 2007 to 2008
$372k
Phenotypic characterization of T’Ho virus and the development of tools for its serologic diagnosisR03AI167042 · NIAID · IOWA STATE UNIVERSITY · PI BLITVICH, BRADLEY J · 2022 to 2023
$153k
NIAID NIH HHS R01 AI114720NIAID NIH HHS R03 AI167042NIAID NIH HHS R21 AI067281Wellcome TrustWellcome Trust 106207
6 · The paper itself

Abstract

A metagenomics approach was used to detect novel and recognized RNA viruses in mosquitoes from the Yucatan Peninsula of Mexico. A total of 1359 mosquitoes of 7 species and 5 genera (Aedes, Anopheles, Culex, Mansonia and Psorophora) were sorted into 37 pools, homogenized and inoculated onto monolayers of Aedes albopictus (C6/36) cells. A second blind passage was performed and then total RNA was extracted and analysed by RNA-seq. Two novel viruses, designated Uxmal virus and Mayapan virus, were identified. Uxmal virus was isolated from three pools of Aedes (Ochlerotatus) taeniorhynchus and phylogenetic data indicate that it should be classified within the recently proposed taxon Negevirus. Mayapan virus was recovered from two pools of Psorophora ferox and is most closely related to unclassified Nodaviridae-like viruses. Two recognized viruses were also detected: Culex flavivirus (family Flaviviridae) and Houston virus (family Mesoniviridae), with one and two isolates being recovered, respectively. The in vitro host ranges of all four viruses were determined by assessing their replicative abilities in cell lines of avian, human, monkey, hamster, murine, lepidopteran and mosquito (Aedes, Anopheles and Culex) origin, revealing that all viruses possess vertebrate replication-incompetent phenotypes. In conclusion, we report the isolation of both novel and recognized RNA viruses from mosquitoes collected in Mexico, and add to the growing plethora of viruses discovered recently through the use of metagenomics.

Indexed as

BiodiversityHost SpecificityAnimalsCell LineCulicidaeHumansMetagenomicsMexicoPhylogenyRNA VirusesSequence Analysis, DNASequence Analysis, RNAVirus CultivationCulex flavivirusHouston virusmetagenomicsMexicomosquitoNegevirusNodaviridaeRNA-seqvirus discovery

Identifiers

PMID30412047
PMCPMC6537628
OpenAlexW2900411092

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.