Evidence map›Paper›PMID 30410863›Full record

ArticleFEBS open bio2018

Identification of reference genes for circulating long noncoding RNA analysis in serum of cervical cancer patients.

Tawin Iempridee, Suphachai Wiwithaphon, Kitiya Piboonprai, Pornpitra Pratedrat, Phattharachanok Khumkhrong, Deanpen Japrung, Sasithon Temisak, Somsak Laiwejpithaya, Pattama Chaopotong, Tararaj Dharakul

Abstract read
In one paragraph

Article in FEBS open bio, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  15. Long non-coding RNAs in oncourology.Non-coding RNA research · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Tawin IemprideeNational Nanotechnology Center National Science and Technology Development Agency Pathum Thani Thailand.ORCID 0000-0001-9128-4894
Suphachai WiwithaphonNational Nanotechnology Center National Science and Technology Development Agency Pathum Thani Thailand.
Kitiya PiboonpraiNational Nanotechnology Center National Science and Technology Development Agency Pathum Thani Thailand.
Pornpitra PratedratNational Nanotechnology Center National Science and Technology Development Agency Pathum Thani Thailand.
Phattharachanok KhumkhrongNational Nanotechnology Center National Science and Technology Development Agency Pathum Thani Thailand.
Deanpen JaprungNational Nanotechnology Center National Science and Technology Development Agency Pathum Thani Thailand.
Sasithon TemisakNational Institute of Metrology Pathum Thani Thailand.
Somsak LaiwejpithayaDepartment of Obstetrics and Gynecology Faculty of Medicine Siriraj Hospital Mahidol University Bangkok Thailand.
Pattama ChaopotongDepartment of Obstetrics and Gynecology Faculty of Medicine Siriraj Hospital Mahidol University Bangkok Thailand.
Tararaj DharakulDepartment of Immunology Faculty of Medicine Siriraj Hospital Mahidol University Bangkok Thailand.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Circulating lncRNAs have attracted considerable attention as potential noninvasive biomarkers for diagnosing cancers. RT-qPCR is the canonical technique for detecting circulating RNA and depends largely on stable reference genes for data normalization. However, no systematic evaluation of reference genes for serum lncRNA has been reported for cervical cancer. Here, we profiled and validated lncRNA expression from serum of cervical cancer patients and controls using microarrays and RT-qPCR. We identified lncRNA RP11-204K16.1, XLOC_012542, and U6 small nuclear RNA as the most stable reference genes based on geNorm, NormFinder, BestKeeper, delta Ct, and RefFinder. These genes were suitable also for samples from different age groups or with hemolysis. Additionally, we discovered lncRNA AC017078.1 and XLOC_011152 as candidate biomarkers, whose expression was down-regulated in cervical cancer. Our findings could aid research on circulating lncRNA and the discovery of blood-based biomarkers for cervical cancer diagnosis.

Indexed as

cervical cancercirculating RNAdiagnostic biomarkerlong noncoding RNAreference genesserum

Identifiers

PMID30410863
PMCPMC6212646

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.