Evidence map›Paper›PMID 30410084›Full record

ArticleScientific reports2018

Origin and age of the causative mutations in KLC2, IMPA1, MED25 and WNT7A unravelled through Brazilian admixed populations.

Allysson Allan de Farias, Kelly Nunes, Renan Barbosa Lemes, Ronald Moura, Gustavo Ribeiro Fernandes, Uirá Souto Melo, Mayana Zatz, Fernando Kok, Silvana Santos

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.1field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Allysson Allan de FariasDepartment of Genetics and Evolutionary Biology, Biosciences Institute, University of São Paulo (USP), São Paulo, SP, Brazil.ORCID http://orcid.org/0000-0002-5322-1785
Kelly NunesDepartment of Genetics and Evolutionary Biology, Biosciences Institute, University of São Paulo (USP), São Paulo, SP, Brazil.
Renan Barbosa LemesDepartment of Genetics and Evolutionary Biology, Biosciences Institute, University of São Paulo (USP), São Paulo, SP, Brazil.
Ronald MouraDepartment of Genetics, Federal University of Pernambuco (UFPE), Recife, PE, Brazil.
Gustavo Ribeiro FernandesDepartment of Chemistry, Institute of Chemistry, University of São Paulo (USP), São Paulo, Brazil.
Uirá Souto MeloDepartment of Genetics and Evolutionary Biology, Biosciences Institute, University of São Paulo (USP), São Paulo, SP, Brazil.
Mayana ZatzDepartment of Genetics and Evolutionary Biology, Biosciences Institute, University of São Paulo (USP), São Paulo, SP, Brazil.
Fernando KokHuman Genome and Stem-Cell Center, Institute of Biosciences, University of São Paulo (USP), São Paulo, Brazil.
Silvana SantosHuman Genome and Stem-Cell Center, Institute of Biosciences, University of São Paulo (USP), São Paulo, Brazil. silvanaipe@gmail.com.ORCID http://orcid.org/0000-0002-5252-0206
Universidade de São Paulo · BRUniversidade Estadual da Paraíba · BRUniversidade Federal de Pernambuco · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mutation age and local ancestry of chromosomal segments harbouring mutations associated with autosomal recessive (AR) disorders in Brazilian admixed populations remain unknown; additionally, inbreeding levels for these affected individuals continue to be estimated based on genealogical information. Here, we calculated inbreeding levels using a runs of homozygosity approach, mutation age and local ancestry to infer the origin of each chromosomal segments containing disorder-causing mutations in KLC2, IMPA1, MED25 and WNT7A. Genotyped data were generated from 18 patients affected by AR diseases and combined to the 1000 genome project (1KGP) and Simons genome diversity project (SGDP) databases to infer local ancestry. We found a major European contribution for mutated haplotypes with recent mutation age and inbreeding values found only in Native American and Middle East individuals. These results contribute to identifying the origin of and to understanding how these diseases are maintained and spread in Brazilian and world populations.

Indexed as

MutationAge FactorsBrazilConsanguinityEuropeFemaleGenetic Predisposition to DiseaseGenetics, PopulationHumansKinesinsMaleMediator ComplexMicrotubule-Associated ProteinsMiddle EastPhosphoric Monoester HydrolasesPhylogeographyKinesinsMED25 protein, humanMediator ComplexMicrotubule-Associated Proteinsmyo-inositol-1 (or 4)-monophosphatasePhosphoric Monoester HydrolasesWNT7A protein, humanWnt Proteins

Identifiers

PMID30410084
PMCPMC6224410
OpenAlexW2899150943

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.