Evidence map›Paper›PMID 30409803›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

A small single-domain protein folds through the same pathway on and off the ribosome.

Emily J Guinn, Pengfei Tian, Mia Shin, Robert B Best, Susan Marqusee

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Translation Rates and Protein Folding.Journal of molecular biology · 2024
    Review
  6. Article
  7. How the ribosome shapes cotranslational protein folding.Current opinion in structural biology · 2024
    Review
  8. Article
  9. Article
  10. Co-Translational Folding of Multi-Domain Proteins.Frontiers in molecular biosciences · 2022
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Co-translational folding of nascent polypeptides: Multi-layered mechanisms for the efficient biogenesis of functional proteins.BioEssays : news and reviews in molecular, cellular and developmental biology · 2021
    Article
  16. Article
  17. Review
  18. Mechanisms of Cotranslational Protein Maturation in Bacteria.Frontiers in molecular biosciences · 2021
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Emily J GuinnInstitute for Quantitative Biosciences (QB3), University of California, Berkeley, CA 94720.
Pengfei TianLaboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892.
Mia ShinDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720.
Robert B BestLaboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892.ORCID 0000-0002-7893-3543
Susan MarquseeInstitute for Quantitative Biosciences (QB3), University of California, Berkeley, CA 94720; marqusee@berkeley.edu.

Funding

Understanding protein folding, evolution and function via molecular simulationZIADK075104 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI BEST, ROBERT · 2013 to 2025
$13.7M
Sequence and Environmental Determinants of the Protein Energy LandscapeR01GM050945 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI MARQUSEE, SUSAN · 1999 to 2022
$7.4M
Determining effects of environmental conditions on protein folding using single mF32GM110940 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI GUINN, EMILY · 2014 to 2016
$164k
NIGMS NIH HHS F32 GM110940NIGMS NIH HHS R01 GM050945
6 · The paper itself

Abstract

In vivo, proteins fold and function in a complex environment subject to many stresses that can modulate a protein's energy landscape. One aspect of the environment pertinent to protein folding is the ribosome, since proteins have the opportunity to fold while still bound to the ribosome during translation. We use a combination of force and chemical denaturant (chemomechanical unfolding), as well as point mutations, to characterize the folding mechanism of the src SH3 domain both as a stalled ribosome nascent chain and free in solution. Our results indicate that src SH3 folds through the same pathway on and off the ribosome. Molecular simulations also indicate that the ribosome does not affect the folding pathway for this small protein. Taken together, we conclude that the ribosome does not alter the folding mechanism of this small protein. These results, if general, suggest the ribosome may exert a bigger influence on the folding of multidomain proteins or protein domains that can partially fold before the entire domain sequence is outside the ribosome exit tunnel.

Indexed as

Molecular Dynamics SimulationProtein BiosynthesisProtein DomainsProtein FoldingProteinsRibosomesProteinscotranslational foldingoptical tweezersprotein foldingribosomesingle-molecule force spectroscopy

Identifiers

PMID30409803
PMCPMC6275501

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.