Evidence map›Paper›PMID 30408305›Full record

ArticleAngewandte Chemie (International ed. in English)2018

A Mass-Spectrometry-Based Modelling Workflow for Accurate Prediction of IgG Antibody Conformations in the Gas Phase.

Kjetil Hansen, Andy M Lau, Kevin Giles, James M McDonnell, Weston B Struwe, Brian J Sutton, Argyris Politis

Abstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
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  7. Dissecting the structural heterogeneity of proteins by native mass spectrometry.Protein science : a publication of the Protein Society · 2023
    Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Cold Denaturation of Proteins in the Absence of Solvent: Implications for Protein Storage.Angewandte Chemie (Weinheim an der Bergstrasse, Germany) · 2022
    Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Selectivity over coverage inChemical science · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kjetil HansenDepartment of Chemistry, King's College London, 7 Trinity Street, London, SE1 1DB, UK.ORCID 0000-0002-0085-8440
Andy M LauDepartment of Chemistry, King's College London, 7 Trinity Street, London, SE1 1DB, UK.ORCID 0000-0003-0572-7826
Kevin GilesWaters Corp., Stamford Road, Wilmslow, SK9 4AX, UK.
James M McDonnellRandall Centre for Cell and Molecular Biophysics, King's College London, UK.ORCID 0000-0001-9037-2980
Weston B StruweDepartment of Chemistry, University of Oxford, UK.ORCID 0000-0003-0594-226X
Brian J SuttonRandall Centre for Cell and Molecular Biophysics, King's College London, UK.ORCID 0000-0002-4363-7568
Argyris PolitisDepartment of Chemistry, King's College London, 7 Trinity Street, London, SE1 1DB, UK.ORCID 0000-0002-6658-3224

Funding

Biotechnology and Biological Sciences Research Council BB/M009513/1Medical Research Council G0200486Medical Research Council G0501494Medical Research Council G1000758Medical Research Council G1100090Wellcome Trust 109854/Z/15/Z
6 · The paper itself

Abstract

Immunoglobulins are biomolecules involved in defence against foreign substances. Flexibility is key to their functional properties in relation to antigen binding and receptor interactions. We have developed an integrative strategy combining ion mobility mass spectrometry (IM-MS) with molecular modelling to study the conformational dynamics of human IgG antibodies. Predictive models of all four human IgG subclasses were assembled and their dynamics sampled in the transition from extended to collapsed state during IM-MS. Our data imply that this collapse of IgG antibodies is related to their intrinsic structural features, including Fab arm flexibility, collapse towards the Fc region, and the length of their hinge regions. The workflow presented here provides an accurate structural representation in good agreement with the observed collision cross section for these flexible IgG molecules. These results have implications for studying other nonglobular flexible proteins.

Indexed as

GasesImmunoglobulin GMass SpectrometryModels, MolecularProtein ConformationGasesImmunoglobulin Gconformation analysisimmunoglobulinion mobilitymass spectrometrymolecular dynamics

Identifiers

PMID30408305
PMCPMC6392142

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.