Evidence map›Paper›PMID 30408270›Full record

ArticleHuman mutation2019

In silico and in vivo models for Qatari-specific classical homocystinuria as basis for development of novel therapies.

Hesham M Ismail, Navaneethakrishnan Krishnamoorthy, Nader Al-Dewik, Hatem Zayed, Nura A Mohamed, Valeria Di Giacomo, Sapna Gupta, Johannes Häberle, Beat Thöny, Henk J Blom and 3 more

Open access · greenAbstract read
In one paragraph

Article in Human mutation, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.8field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 6 countries.

Hesham M IsmailDepartment of Biomedical Sciences, College of Health Sciences, Qatar University, Doha, Qatar.
Navaneethakrishnan KrishnamoorthySystems Biology Department, Sidra Medical and Research Centre, Doha, Qatar.
Nader Al-DewikClinical and Metabolic Genetics, Department of Pediatrics, Hamad Medical Corporation, Doha, Qatar.
Hatem ZayedDepartment of Biomedical Sciences, College of Health Sciences, Qatar University, Doha, Qatar.
Nura A MohamedBiomedical Research Center, Qatar University, Doha, Qatar.
Valeria Di GiacomoZeClinics SL, PRBB (Barcelona Biomedical Research Park), Barcelona, Spain.
Sapna GuptaCancer Biology Program, Fox Chase Cancer Center, Philadelphia, Pennsylvania.
Johannes HäberleUniversity Children's Hospital and Children's Research Center, Division of Metabolism, Zurich, Switzerland.ORCID 0000-0003-0635-091X
Beat ThönyUniversity Children's Hospital and Children's Research Center, Division of Metabolism, Zurich, Switzerland.
Henk J BlomLaboratory of Clinical Biochemistry and Metabolism, Department of General Pediatrics, Adolescent Medicine and Neonatology, University Medical Centre Freiburg, Freiburg, Germany.
Waren D KrugerCancer Biology Program, Fox Chase Cancer Center, Philadelphia, Pennsylvania.ORCID 0000-0002-4990-3695
Tawfeg Ben-OmranClinical and Metabolic Genetics, Department of Pediatrics, Hamad Medical Corporation, Doha, Qatar.
Gheyath K NasrallahDepartment of Biomedical Sciences, College of Health Sciences, Qatar University, Doha, Qatar.ORCID 0000-0001-9252-1038
Qatar University · QAFox Chase Cancer Center · USHamad Medical Corporation · QAUniversity Children's Hospital Zurich · CHBarcelona Biomedical Research Park · ESSidra Medical and Research Center · QAUniversity Medical Center Freiburg · DE

Funding

Treatment of CBS Deficiency with Proteostasis ModulatorsR01DK101404 · NIDDK · RESEARCH INST OF FOX CHASE CAN CTR · PI KRUGER, WARREN D · 2014 to 2020
$3.0M
NIDDK NIH HHS R01 DK101404Qatar National Research Fund NPR7-355-3-088
6 · The paper itself

Abstract

Homocystinuria is a rare inborn error of methionine metabolism caused by cystathionine β-synthase (CBS) deficiency. The prevalence of homocystinuria in Qatar is 1:1,800 births, mainly due to a founder Qatari missense mutation, c.1006C>T; p.R336C (p.Arg336Cys). We characterized the structure-function relationship of the p.R336C-mutant protein and investigated the effect of different chemical chaperones to restore p.R336C-CBS activity using three models: in silico, ΔCBS yeast, and CRISPR/Cas9 p.R336C knock-in HEK293T and HepG2 cell lines. Protein modeling suggested that the p.R336C induces severe conformational and structural changes, perhaps influencing CBS activity. Wild-type CBS, but not the p.R336C mutant, was able to restore the yeast growth in ΔCBS-deficient yeast in a complementation assay. The p.R336C knock-in HEK293T and HepG2 cells decreased the level of CBS expression and reduced its structural stability; however, treatment of the p.R336C knock-in HEK293T cells with betaine, a chemical chaperone, restored the stability and tetrameric conformation of CBS, but not its activity. Collectively, these results indicate that the p.R336C mutation has a deleterious effect on CBS structure, stability, and activity, and using the chemical chaperones approach for treatment could be ineffective in restoring p.R336C CBS activity.

Indexed as

Computer SimulationCystathionine beta-SynthaseEnzyme StabilityGene Expression Regulation, EnzymologicHEK293 CellsHep G2 CellsHomocystinuriaHumansMethionineMolecular ChaperonesMutant ProteinsMutation, MissenseProtein FoldingProtein Structure, TertiaryQatarStructure-Activity RelationshipCystathionine beta-SynthaseMethionineMolecular ChaperonesMutant ProteinsCBSchemical chaperonesHomocystinuriain silicoin vivo modelsp.R336C mutationQatar

Identifiers

PMID30408270
PMCPMC6586426
OpenAlexW2899833778

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.