ArticlePlant biotechnology journal2019
Resequencing of cv CRI-12 family reveals haplotype block inheritance and recombination of agronomically important genes in artificial selection.
Article in Plant biotechnology journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed.
- Impacts of parental genomic divergence in non-syntenic regions on cotton heterosis.Journal of advanced research · 2025Article
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- Cotton pedigree genome reveals restriction of cultivar-driven strategy in cotton breeding.Genome biology · 2023Article
- Dissection of the Pearl of Csaba pedigree identifies key genomic segments related to early ripening in grape.Plant physiology · 2023Article
- Systematic identification of TPS genes in Gossypium and their characteristics in response to flooding stress.Frontiers in plant science · 2023Article
- Genome-wide association study of fiber yield-related traits uncovers the novel genomic regions and candidate genes in Indian upland cotton (Frontiers in plant science · 2023Article
- Editorial: Identification and functional analysis of differentially expressed genes in plant response to abiotic stresses.Frontiers in plant science · 2023Article
- A high-quality assembled genome and its comparative analysis decode the adaptive molecular mechanism of the number one Chinese cotton variety CRI-12.GigaScience · 2022Article
- Genomic and GWAS analyses demonstrate phylogenomic relationships of Gossypium barbadense in China and selection for fibre length, lint percentage and Fusarium wilt resistance.Plant biotechnology journal · 2022Article
- Features and applications of haplotypes in crop breeding.Communications biology · 2021Review
- A Calmodulin-Like Gene (Frontiers in plant science · 2021Article
- Advances and Challenges in the Breeding of Salt-Tolerant Rice.International journal of molecular sciences · 2020Review
- EST-SNP Study ofGenes · 2020Article
- Breeding crops by design for future agriculture.Journal of Zhejiang University. Science. B · 2020Article
- Article
- Knockdown of Cytochrome P450 GenesGenes · 2019Article
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24 authors.
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Abstract
Although efforts have been taken to exploit diversity for yield and quality improvements, limited progress on using beneficial alleles in domesticated and undomesticated cotton varieties is limited. Given the complexity and limited amount of genomic information since the completion of four cotton genomes, characterizing significant variations and haplotype block inheritance under artificial selection has been challenging. Here we sequenced Gossypium hirsutum L. cv CRI-12 (the cotton variety with the largest acreage in China), its parental cultivars, and progeny cultivars, which were bred by the different institutes in China. In total, 3.3 million SNPs were identified and 118, 126 and 176 genes were remarkably correlated with Verticillium wilt, salinity and drought tolerance in CRI-12, respectively. Transcriptome-wide analyses of gene expression, and functional annotations, have provided support for the identification of genes tied to these tolerances. We totally discovered 58 116 haplotype blocks, among which 23 752 may be inherited and 1029 may be recombined under artificial selection. This survey of genetic diversity identified loci that may have been subject to artificial selection and documented the haplotype block inheritance and recombination, shedding light on the genetic mechanism of artificial selection and guiding breeding efforts for the genetic improvement of cotton.
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