Evidence map›Paper›PMID 30407670›Full record

ArticleThe Plant journal : for cell and molecular biology2019

The Arabidopsis RRM domain protein EDM3 mediates race-specific disease resistance by controlling H3K9me2-dependent alternative polyadenylation of RPP7 immune receptor transcripts.

Yan Lai, Alayne Cuzick, Xueqing M Lu, Jianqiang Wang, Neerja Katiyar, Tokuji Tsuchiya, Karine Le Roch, John M McDowell, Eric Holub, Thomas Eulgem

Open access · bronzeAbstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
6.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Molecular basis of locus-specific H3K9 methylation catalyzed by SUVH6 in plants.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Oomycetes Used in Arabidopsis Research.The arabidopsis book · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 4 countries.

Yan LaiDepartment of Botany and Plant Sciences, Center for Plant Cell Biology, Institute of Integrative Genome Biology, University of California at Riverside, Riverside, CA, 92521, USA.
Alayne CuzickSchool of Life Sciences, University of Warwick, Wellesbourne Campus, Warwick, CV35 9EF, UK.
Xueqing M LuDepartment of Molecular, Cell and Systems Biology, Center for Infectious Disease and Vector Research, Institute of Integrative Genome Biology, University of California at Riverside, Riverside, CA, 92521, USA.
Jianqiang WangDepartment of Botany and Plant Sciences, Center for Plant Cell Biology, Institute of Integrative Genome Biology, University of California at Riverside, Riverside, CA, 92521, USA.
Neerja KatiyarInstitute of Integrative Genome Biology, University of California at Riverside, Riverside, CA, 92521, USA.
Tokuji TsuchiyaCollege of Bioresource Sciences, Nihon University, Kanagawa, 252-0880, Japan.
Karine Le RochDepartment of Molecular, Cell and Systems Biology, Center for Infectious Disease and Vector Research, Institute of Integrative Genome Biology, University of California at Riverside, Riverside, CA, 92521, USA.
John M McDowellDepartment of Plant Pathology, Physiology, and Weed Science, Virginia Tech, Blacksburg, VA, 24060-0329, USA.
Eric HolubSchool of Life Sciences, University of Warwick, Wellesbourne Campus, Warwick, CV35 9EF, UK.
Thomas EulgemDepartment of Botany and Plant Sciences, Center for Plant Cell Biology, Institute of Integrative Genome Biology, University of California at Riverside, Riverside, CA, 92521, USA.
University of California, Riverside · USFujian Agriculture and Forestry University · CNNihon University · JPRothamsted Research · GBUniversity of Warwick · GBVirginia Tech · US

Funding

Chromatin structure and control of gene expression in the human malaria parasiteR01AI136511 · NIAID · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI LE ROCH, KARINE GAELLE · 2018 to 2022
$3.4M
The spatial organization of the Plasmodium genome throughout its infectious cycleR01AI106775 · NIAID · UNIVERSITY OF WASHINGTON · PI LE ROCH, KARINE GAELLE, NOBLE, WILLIAM STAFFORD · 2013 to 2016
$1.8M
Biotechnology and Biological Science Research Council 207/ICR07554NIAID NIH HHS R01 AI106775NIAID NIH HHS R01 AI136511
6 · The paper itself

Abstract

The NLR-receptor RPP7 mediates race-specific immunity in Arabidopsis. Previous screens for enhanced downy mildew (edm) mutants identified the co-chaperone SGT1b (EDM1) and the PHD-finger protein EDM2 as critical regulators of RPP7. Here, we describe a third edm mutant compromised in RPP7 immunity, edm3. EDM3 encodes a nuclear-localized protein featuring an RNA-recognition motif. Like EDM2, EDM3 promotes histone H3 lysine 9 dimethylation (H3K9me2) at RPP7. Global profiling of H3K9me2 showed EDM3 to affect this silencing mark at a large set of loci. Importantly, both EDM3 and EDM2 co-associate in vivo with H3K9me2-marked chromatin and transcripts at a critical proximal polyadenylation site of RPP7, where they suppress proximal transcript polyadeylation/termination. Our results highlight the complexity of plant NLR gene regulation, and establish a functional and physical link between a histone mark and NLR-transcript processing.

Indexed as

ArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantRNA-Binding ProteinsArabidopsis ProteinsRNA-Binding ProteinsRPP7 protein, Arabidopsisdisease-resistance geneshistone-binding proteinsHyaloperonospora arabidopsidisRNA-binding proteintranscript processing

Identifiers

PMID30407670
PMCPMC7138032
OpenAlexW2899944923

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.