Evidence map›Paper›PMID 30407532›Full record

ArticleNucleic acids research2019

MaizeGDB 2018: the maize multi-genome genetics and genomics database.

John L Portwood, Margaret R Woodhouse, Ethalinda K Cannon, Jack M Gardiner, Lisa C Harper, Mary L Schaeffer, Jesse R Walsh, Taner Z Sen, Kyoung Tak Cho, David A Schott and 11 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 160 papers.

0numbers the graph read from it
0cells of the map it votes in
160citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

160 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Genome-Wide Identification of the P-Type CaInternational journal of molecular sciences · 2026
    Article
  7. Yield impact of source-sink-regulated senescence in hybrid maize and genetic architecture in exPVP inbreds.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. GeneCAD: Plant Genome Annotation with a DNA Foundation Model.bioRxiv : the preprint server for biology · 2025
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

100 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

John L PortwoodUSDA-ARS Corn Insects and Crop Genetics Research Unit, Ames, IA 50011, USA.
Margaret R WoodhouseDepartment of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA 50011, USA.
Ethalinda K CannonUSDA-ARS Corn Insects and Crop Genetics Research Unit, Ames, IA 50011, USA.
Jack M GardinerDivision of Animal Sciences, University of Missouri, Columbia, MO 65211, USA.
Lisa C HarperUSDA-ARS Corn Insects and Crop Genetics Research Unit, Ames, IA 50011, USA.
Mary L SchaefferDivision of Plant Sciences, University of Missouri, Columbia, MO 65211, USA.
Jesse R WalshUSDA-ARS Corn Insects and Crop Genetics Research Unit, Ames, IA 50011, USA.
Taner Z SenUSDA-ARS Crop Improvement and Genetics Research Unit, Albany, CA 94710, USA.
Kyoung Tak ChoDepartment of Computer Science, Iowa State University, Ames, IA 50011, USA.
David A SchottDepartment of Computer Science, Iowa State University, Ames, IA 50011, USA.
Bremen L BraunUSDA-ARS Corn Insects and Crop Genetics Research Unit, Ames, IA 50011, USA.
Miranda DietzeDepartment of Genetics, Development, and Cell Biology, Iowa State University, Ames, IA 50011, USA.
Brittney DunfeeDepartment of Genetics, Development, and Cell Biology, Iowa State University, Ames, IA 50011, USA.
Christine G ElsikDivision of Animal Sciences, University of Missouri, Columbia, MO 65211, USA.
Nancy ManchandaDepartment of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA 50011, USA.
Ed CoeDivision of Plant Sciences, University of Missouri, Columbia, MO 65211, USA.
Marty SachsUSDA/ARS/MWA Soybean/Maize Germplasm, Pathology & Genetics Research Unit, Urbana, IL, 61801, USA.
Philip StinardUSDA/ARS/MWA Soybean/Maize Germplasm, Pathology & Genetics Research Unit, Urbana, IL, 61801, USA.
Josh TolbertUSDA/ARS/MWA Soybean/Maize Germplasm, Pathology & Genetics Research Unit, Urbana, IL, 61801, USA.
Shane ZimmermanUSDA/ARS/MWA Soybean/Maize Germplasm, Pathology & Genetics Research Unit, Urbana, IL, 61801, USA.
Carson M AndorfUSDA-ARS Corn Insects and Crop Genetics Research Unit, Ames, IA 50011, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Since its 2015 update, MaizeGDB, the Maize Genetics and Genomics database, has expanded to support the sequenced genomes of many maize inbred lines in addition to the B73 reference genome assembly. Curation and development efforts have targeted high quality datasets and tools to support maize trait analysis, germplasm analysis, genetic studies, and breeding. MaizeGDB hosts a wide range of data including recent support of new data types including genome metadata, RNA-seq, proteomics, synteny, and large-scale diversity. To improve access and visualization of data types several new tools have been implemented to: access large-scale maize diversity data (SNPversity), download and compare gene expression data (qTeller), visualize pedigree data (Pedigree Viewer), link genes with phenotype images (MaizeDIG), and enable flexible user-specified queries to the MaizeGDB database (MaizeMine). MaizeGDB also continues to be the community hub for maize research, coordinating activities and providing technical support to the maize research community. Here we report the changes MaizeGDB has made within the last three years to keep pace with recent software and research advances, as well as the pan-genomic landscape that cheaper and better sequencing technologies have made possible. MaizeGDB is accessible online at https://www.maizegdb.org.

Indexed as

Databases, GeneticComputational BiologyGene Expression Regulation, PlantGenetic VariationGenome, PlantGenomicsInformation Storage and RetrievalInternetPolymorphism, Single NucleotideProteomicsUser-Computer InterfaceZea mays

Identifiers

PMID30407532
PMCPMC6323944

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.