Evidence map›Paper›PMID 30406863›Full record

ArticleBotanical studies2018

Nuclear and chloroplast DNA phylogeography suggests an Early Miocene southward expansion of Lithocarpus (Fagaceae) on the Asian continent and islands.

Chih-Kai Yang, Yu-Chung Chiang, Bing-Hong Huang, Li-Ping Ju, Pei-Chun Liao

Open access · goldAbstract read
In one paragraph

Article in Botanical studies, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. The complete chloroplast genome sequence ofMitochondrial DNA. Part B, Resources · 2022
    Article
  5. Phylogeny and Historical Biogeography ofFrontiers in plant science · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Chih-Kai YangDepartment of Life Science, National Taiwan Normal University, 88, Ting-Chow Rd, Sec 4, Taipei, 116, Taiwan.
Yu-Chung ChiangDepartment of Biological Sciences, National Sun Yat-sen University, 70, Lien-Hai Rd., Kaohsiung, 80424, Taiwan.
Bing-Hong HuangDepartment of Life Science, National Taiwan Normal University, 88, Ting-Chow Rd, Sec 4, Taipei, 116, Taiwan.
Li-Ping JuBotanical Garden Division, Taiwan Forestry Research Institute, 53, Nan-Hai Rd., Taipei, 10066, Taiwan.
Pei-Chun LiaoDepartment of Life Science, National Taiwan Normal University, 88, Ting-Chow Rd, Sec 4, Taipei, 116, Taiwan. pcliao@ntnu.edu.tw.ORCID http://orcid.org/0000-0003-1733-5504
National Taiwan Normal University · TWNational Sun Yat-sen University · TWTaiwan Forestry Research Institute · TW

Funding

Ministry of Science and Technology, Taiwan MOST 105-2628-B-003 -002 -MY3
6 · The paper itself

Abstract

backgroundMost genera of Fagaceae are thought to have originated in the temperate regions except for the genus Lithocarpus, the stone oaks. Lithocarpus is distributed in subtropical and tropical Asia, and its ancestral population is hypothesized to be distributed in tropical regions in Borneo and Indochina. Borneo and the nearby islands (the Greater Sunda Islands) were connected to the Malay Peninsula and Indochina prior to the Pliocene epoch and formed the former Sundaland continent. The Southeast Asian Lithocarpus, is thought to have dispersed between continental Asia and the present Sundaland. The drastic climate changes during the Pliocene and Pleistocene epochs which caused periodic sea-level changes is often used to explain the cause of its diversity. The aim of this study was to establish phylogenetic relationships by analyzing nuclear (nrDNA) and chloroplast (cpDNA) DNA in order to describe and analyze the origin, causes of diversification and historical biogeography of Lithocarpus.

resultsPhylogeny reconstructed through the multiple-species coalescent method with nrDNA and cpDNA revealed that the continental-Asian taxa were clustered at the basal lineages. The derived lineages of tropical Lithocarpus, with the inference of a subtropical ancestral state, imply a southward migration in the Early Miocene period with subsequent in situ diversification in the Greater Sunda Islands. The gradual decrease in temperature since the Middle Miocene period is proposed as a cause of the increase in the net diversification rate.

conclusionsThe historical ancestral origin of Lithocarpus has been suggested to be mainland Asia. Southward migration in the Early Miocene period with subsequent in situ diversification could explain the current diversity of stone oaks in Southeast Asia. This study also considered the multiple origins of stone oaks currently indigenous to the subtropical islands offshore and near mainland China. Our results provide phylogenetic evidence for a subtropical origin of Asian stone oaks and reveal the process of diversification and how it fits into the timeline of major geologic and climatic events rather than local, episodic, rate-shifting events.

Indexed as

Continental AsiaDispersal–extinction–cladogenesis (DEC)Diversification rateEndemismGreater Sunda IslandsHistorical biogeographyIndochinaLithocarpusPhylogenyStone oak

Identifiers

PMID30406863
PMCPMC6223401
OpenAlexW2899922813

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.