Evidence map›Paper›PMID 30406445›Full record

ArticleJournal of assisted reproduction and genetics2019

Gene variants identified by whole-exome sequencing in 33 French women with premature ovarian insufficiency.

Xiang Yang, Philippe Touraine, Swapna Desai, Gregory Humphreys, Huaiyang Jiang, Alexander Yatsenko, Aleksandar Rajkovic

Abstract read
In one paragraph

Article in Journal of assisted reproduction and genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
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  10. A Human HomozygousGenes · 2024
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  16. Mechanisms of ovarian aging in women: a review.Journal of ovarian research · 2023
    Review
  17. Selected Genetic Factors Associated with Primary Ovarian Insufficiency.International journal of molecular sciences · 2023
    Review
  18. Article
  19. The Role ofJournal of clinical medicine · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xiang YangDepartment of Obstetrics, Gynecology and Reproductive Sciences, Magee-Womens Research Institute, University of Pittsburgh, Pittsburgh, PA, USA.
Philippe TouraineDepartment of Endocrinology and Reproductive Medicine, Centre des Maladies Endocriniennes Rares de la Croissance et du Développement, Centre des Pathologies Gynécologiques Rares, Paris, France.
Swapna DesaiDepartment of Obstetrics, Gynecology and Reproductive Sciences, Magee-Womens Research Institute, University of Pittsburgh, Pittsburgh, PA, USA.
Gregory HumphreysMagee-Womens Hospital, Pittsburgh, PA, USA.
Huaiyang JiangDepartment of Obstetrics, Gynecology and Reproductive Sciences, Magee-Womens Research Institute, University of Pittsburgh, Pittsburgh, PA, USA.
Alexander YatsenkoDepartment of Obstetrics, Gynecology and Reproductive Sciences, Magee-Womens Research Institute, University of Pittsburgh, Pittsburgh, PA, USA.
Aleksandar RajkovicDepartment of Pathology, University of California, San Francisco, CA, 94143-0794, USA. aleks.rajkovic@ucsf.edu.

Funding

Transcriptional Regulation of Early FolliculogenesisR01HD044858 · NICHD · MAGEE-WOMEN'S RES INST AND FOUNDATION · PI RAJKOVIC, ALEKSANDAR · 2004 to 2017
$2.9M
Genomic Basis of Premature Ovarian InsufficiencyR01HD070647 · NICHD · MAGEE-WOMEN'S RES INST AND FOUNDATION · PI RAJKOVIC, ALEKSANDAR · 2012 to 2016
$2.6M
Genomic signatures of X-linked and autosomal candidate-genes in azoospermiaR21HD080755 · NICHD · MAGEE-WOMEN'S RES INST AND FOUNDATION · PI YATSENKO, ALEXANDER N · 2015 to 2016
$448k
Genomic integrity of the X chromosome & Ovary-Specific Autosomal Genes R21HD074278 · NICHD · MAGEE-WOMEN'S RES INST AND FOUNDATION · PI RAJKOVIC, ALEKSANDAR · 2014 to 2015
$441k
National Institute of Child Health and Human Development R01HD070647 and R21HD074278NICHD NIH HHS R01 HD044858NICHD NIH HHS R01 HD070647NICHD NIH HHS R21 HD074278NICHD NIH HHS R21 HD080755
6 · The paper itself

Abstract

purposeTo investigate the potential genetic etiology of premature ovarian insufficiency (POI).

methodsWhole-exome sequencing (WES) was done on DNA samples from women diagnosed with POI. Mutations identified were analyzed by in silico tools and were annotated according to the guidelines of the American College of Medical Genetics and Genomics. Plausible variants were confirmed by Sanger sequencing.

resultsFour of the 33 individuals (12%) carried pathogenic or likely pathogenic variants, and 6 individuals carried variants of unknown significance. The genes identified with pathogenic or likely pathogenic variants included PMM2, MCM9, and PSMC3IP.

conclusionsWES is an efficient tool for identifying gene variants in POI women; however, interpretation of variants is hampered by few exome studies involving ovarian disorders and the need for trio sequencing to determine inheritance and to detect de novo variants.

Indexed as

ExomeGenetic VariationAdultExome SequencingFemaleHumansMinichromosome Maintenance ProteinsNuclear ProteinsPhosphotransferases (Phosphomutases)Primary Ovarian InsufficiencyTrans-ActivatorsMCM9 protein, humanMinichromosome Maintenance ProteinsNuclear Proteinsphosphomannomutase 2, humanPhosphotransferases (Phosphomutases)PSMC3IP protein, humanTrans-ActivatorsGene variantsPremature ovarian insufficiencyWhole-exome sequencing

Identifiers

PMID30406445
PMCPMC6338598

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.