Evidence map›Paper›PMID 30406280›Full record

ArticlePlant cell reports2019

Comparison of elicitor-based effects on metabolic responses of Taxus × media hairy roots in perfluorodecalin-supported two-phase culture system.

K Sykłowska-Baranek, W Rymaszewski, M Gaweł, P Rokicki, M Pilarek, M Grech-Baran, J Hennig, A Pietrosiuk

Open access · hybridAbstract read
In one paragraph

Article in Plant cell reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

K Sykłowska-BaranekDepartment of Pharmaceutical Biology and Medicinal Plant Biotechnology, Faculty of Pharmacy with the Laboratory Medicine Division, Medical University of Warsaw, 1 Banacha Str, 02-097, Warsaw, Poland. katarzyna.syklowska-baranek@wum.edu.pl.ORCID http://orcid.org/0000-0002-9150-7872
W RymaszewskiInstitute of Biochemistry and Biophysics, Laboratory of Plant Pathogenesis, Polish Academy of Sciences, 5A Pawińskiego Str, 02-106, Warsaw, Poland.ORCID http://orcid.org/0000-0002-9829-9826
M GawełDepartment of Pharmaceutical Biology and Medicinal Plant Biotechnology, Faculty of Pharmacy with the Laboratory Medicine Division, Medical University of Warsaw, 1 Banacha Str, 02-097, Warsaw, Poland.ORCID http://orcid.org/0000-0002-2690-1363
P RokickiDepartment of Pharmaceutical Biology and Medicinal Plant Biotechnology, Faculty of Pharmacy with the Laboratory Medicine Division, Medical University of Warsaw, 1 Banacha Str, 02-097, Warsaw, Poland.
M PilarekFaculty of Chemical and Process Engineering, Warsaw University of Technology, Waryńskiego 1, 00-645, Warsaw, Poland.ORCID http://orcid.org/0000-0002-8489-0842
M Grech-BaranDepartment of Pharmaceutical Biology and Medicinal Plant Biotechnology, Faculty of Pharmacy with the Laboratory Medicine Division, Medical University of Warsaw, 1 Banacha Str, 02-097, Warsaw, Poland.ORCID http://orcid.org/0000-0002-3095-8944
J HennigInstitute of Biochemistry and Biophysics, Laboratory of Plant Pathogenesis, Polish Academy of Sciences, 5A Pawińskiego Str, 02-106, Warsaw, Poland.ORCID http://orcid.org/0000-0003-0156-1320
A PietrosiukDepartment of Pharmaceutical Biology and Medicinal Plant Biotechnology, Faculty of Pharmacy with the Laboratory Medicine Division, Medical University of Warsaw, 1 Banacha Str, 02-097, Warsaw, Poland.ORCID http://orcid.org/0000-0001-7165-5336
Medical University of Warsaw · PLInstitute of Biochemistry and Biophysics, Polish Academy of Sciences · PLWarsaw University of Technology · PL

Funding

Warszawski Uniwersytet Medyczny the Statutory Budget [FW21/N/2017] of the Medical University of Warsaw
6 · The paper itself

Abstract

key messageTwo lines of Taxus × media hairy roots harbouring or not the TXS transgene demonstrated diverse gene expression and taxane yield during cultivation in PFD-supported two liquid-phase culture system. Two lines of Taxus × media hairy roots were subjected to single or twice-repeated supplementation with methyl jasmonate, sodium nitroprusside, L-phenylalanine, and sucrose feeding. One line harboured transgene of taxadiene synthase (ATMA), while the second (KT) did not. Both hairy root lines were cultured in two-phase culture systems containing perfluorodecalin (PFD) in aerated or degassed form. The relationship between TXS (taxadiene synthase), BAPT (baccatin III: 3-amino, 3-phenylpropanoyltransferase), and DBTNBT (3'-N-debenzoyl-2-deoxytaxol-N-benzoyltransferase) genes and taxane production was analysed. The ATMA and KT lines differed in their potential for taxane accumulation, secretion, and taxane profile. In ATMA biomass, both paclitaxel and baccatin III were detected, while in KT roots only paclitaxel. The most suitable conditions for taxane production for ATMA roots were found in single-elicited supported with PFD-degassed cultures (2 473.29 ± 263.85 µg/g DW), whereas in KT roots in single-elicited cultures with PFD-aerated (470.08 ± 25.15 µg/g DW). The extracellular levels of paclitaxel never exceeded 10% for ATMA roots, while for KT increased up to 76%. The gene expression profile was determined in single-elicited cultures supported with PFD-degassed, where in ATMA roots, the highest taxane yield was obtained, while in KT the lowest one. The gene expression pattern in both investigated root lines differed substantially what resulted in taxane yield characterized particular lines. The highest co-expression of TXS, BAPT and DBTNBT genes noted for ATMA roots harvested 48 h after elicitation corresponded with their higher ability for taxane production in comparison with the effects observed for KT roots.

Indexed as

FluorocarbonsGene Expression Regulation, PlantIsomerasesPlant RootsTaxusFluorocarbonsIsomerasesperfluorodecalintaxa-4(5),11(12)-diene synthaseElicitationGene expressionHairy rootsPerfluorodecalinTaxus

Identifiers

PMID30406280
PMCPMC6320355
OpenAlexW2900295865

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.