Evidence map›Paper›PMID 30406041›Full record

ArticleFrontiers in cellular and infection microbiology2018

Metagenomic Sequencing From Mosquitoes in China Reveals a Variety of Insect and Human Viruses.

Pengpeng Xiao, Chenghui Li, Ying Zhang, Jicheng Han, Xiaofang Guo, Lv Xie, Mingyao Tian, Yiquan Li, Maopeng Wang, Hao Liu and 4 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in cellular and infection microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 34 citations in OpenAlex.

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  13. Novel PutativeViruses · 2023
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  14. Article
  15. Review
  16. Article
  17. Frontiers in cellular and infection microbiology · 2022
    Article
  18. Metavirome Analysis ofFrontiers in cellular and infection microbiology · 2022
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 1 country.

Pengpeng XiaoInstitute of Military Veterinary, Academy of Military Medical Sciences, Changchun, China.
Chenghui LiInstitute of Military Veterinary, Academy of Military Medical Sciences, Changchun, China.
Ying ZhangCollege of Veterinary Medicine, College of Animal Science, Jilin University, Changchun, China.
Jicheng HanInstitute of Military Veterinary, Academy of Military Medical Sciences, Changchun, China.
Xiaofang GuoYunnan Institute of Parasitic Diseases, Simao, China.
Lv XieYunnan Institute of Parasitic Diseases, Simao, China.
Mingyao TianInstitute of Military Veterinary, Academy of Military Medical Sciences, Changchun, China.
Yiquan LiInstitute of Military Veterinary, Academy of Military Medical Sciences, Changchun, China.
Maopeng WangInstitute of Virology, Wenzhou University, Wenzhou, China.
Hao LiuInstitute of Military Veterinary, Academy of Military Medical Sciences, Changchun, China.
Jingqiang RenInstitute of Military Veterinary, Academy of Military Medical Sciences, Changchun, China.
Hongning ZhouYunnan Institute of Parasitic Diseases, Simao, China.
Huijun LuInstitute of Military Veterinary, Academy of Military Medical Sciences, Changchun, China.
Ningyi JinInstitute of Military Veterinary, Academy of Military Medical Sciences, Changchun, China.
Academy of Military Medical Sciences · CNYanbian University · CNYunnan Institute of Parasitic Diseases · CNFoshan University · CNJilin University · CNWenzhou University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We collected 8,700 mosquitoes in three sites in China, which belonged to seven species. Their viromes were tested using metagenomic sequencing and bioinformatic analysis. The abundant viral sequences were detected and annotated belonging to more than 50 viral taxonomic families. The results were verified by PCR, followed by phylogenetic analysis. In the present study, we identified partial viral genes of dengue virus (DENV), a novel circovirus (CCV), densovirus (DNV), Japanese encephalitis virus (JEV), and Wuhan mosquito virus (WMV) in mosquitoes. Metagenomic analysis and PCR amplification revealed three DENV sequences, which were as homologous to the NS3 gene of DENV from Singapore isolated in 2005, with at least 91% nucleotide (nt) identity. Seven fragments of JEV encoding structural proteins were identified belonging to genotype I. They all shared high homology with structural protein genes of JEV isolated from Laos in 2009. The production of infectious virus particles of the newly isolated virus YunnanJEV2017-4 increased after passage from the BHK-21 cell line to the Vero cell line. Novel circovirus-related genes were identified and as being related to an unnamed gene of a mosquito circovirus (MCCV) sequence from the USA isolated in 2011, with at least 41% nt identity: this distant relationship suggests that the parent virus might belong to a novel circovirus genus. Additionally, numerous known viruses and some unknown viruses were also detected in mosquitoes from Yunnan province, China, which will be tested for propagation.

Indexed as

BiodiversityMetagenomicsAnimalsChinaChlorocebus aethiopsComputational BiologyMosquito VectorsPhylogenyPolymerase Chain ReactionSequence Analysis, DNAVirusesmetagenomic analysismosquitophylogenetic analysisviromevirus detection

Identifiers

PMID30406041
PMCPMC6202873
OpenAlexW2895793417

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.