ArticleFrontiers in genetics2018
The Site Frequency/Dosage Spectrum of Autopolyploid Populations.
Article in Frontiers in genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.
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Who cites it
3 citing papers in PubMed.
- Article
- Quantitative evaluation of nonlinear methods for population structure visualization and inference.G3 (Bethesda, Md.) · 2022Article
- Natural variation and improved genome annotation of the emerging biofuel crop field pennycress (Thlaspi arvense).G3 (Bethesda, Md.) · 2022Article
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Authors and funding
3 authors.
Funding
Abstract
The Site Frequency Spectrum (SFS) and the heterozygosity of allelic variants are among the most important summary statistics for population genetic analysis of diploid organisms. We discuss the generalization of these statistics to populations of autopolyploid organisms in terms of the joint Site Frequency/Dosage Spectrum and its expected value for autopolyploid populations that follow the standard neutral model. Based on these results, we present estimators of nucleotide variability from High-Throughput Sequencing (HTS) data of autopolyploids and discuss potential issues related to sequencing errors and variant calling. We use these estimators to generalize Tajima's
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