Evidence map›Paper›PMID 30405210›Full record

ArticleScientific reports2018

Effects of CRISPR/Cas9 dosage on TICAM1 and RBL gene mutation rate, embryonic development, hatchability and fry survival in channel catfish.

Ahmed Elaswad, Karim Khalil, Zhi Ye, Zhanjiang Liu, Shikai Liu, Eric Peatman, Ramjie Odin, Khoi Vo, David Drescher, Kamal Gosh and 4 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 54 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 5 countries.

Ahmed ElaswadSchool of Fisheries, Aquaculture and Aquatic Sciences, Auburn University, Alabama, 36849, USA.
Karim KhalilSchool of Fisheries, Aquaculture and Aquatic Sciences, Auburn University, Alabama, 36849, USA.
Zhi YeSchool of Fisheries, Aquaculture and Aquatic Sciences, Auburn University, Alabama, 36849, USA. zzy0008@tigermail.auburn.edu.
Zhanjiang LiuSchool of Fisheries, Aquaculture and Aquatic Sciences, Auburn University, Alabama, 36849, USA.
Shikai LiuSchool of Fisheries, Aquaculture and Aquatic Sciences, Auburn University, Alabama, 36849, USA.
Eric PeatmanSchool of Fisheries, Aquaculture and Aquatic Sciences, Auburn University, Alabama, 36849, USA.
Ramjie OdinSchool of Fisheries, Aquaculture and Aquatic Sciences, Auburn University, Alabama, 36849, USA.
Khoi VoSchool of Fisheries, Aquaculture and Aquatic Sciences, Auburn University, Alabama, 36849, USA.
David DrescherSchool of Fisheries, Aquaculture and Aquatic Sciences, Auburn University, Alabama, 36849, USA.
Kamal GoshSchool of Fisheries, Aquaculture and Aquatic Sciences, Auburn University, Alabama, 36849, USA.
Guyu QinSchool of Fisheries, Aquaculture and Aquatic Sciences, Auburn University, Alabama, 36849, USA.
William BuggSchool of Fisheries, Aquaculture and Aquatic Sciences, Auburn University, Alabama, 36849, USA.
Nathan BackenstoseSchool of Fisheries, Aquaculture and Aquatic Sciences, Auburn University, Alabama, 36849, USA.
Rex DunhamSchool of Fisheries, Aquaculture and Aquatic Sciences, Auburn University, Alabama, 36849, USA.
Auburn University · USBuffalo State University · USCairo University · EGSyracuse University · USUniversity of Manitoba · CAUniversity of Maryland, College Park · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The current study was conducted to assess the effects of microinjection of different dosages of guide RNA (gRNA)/Cas9 protein on the mutation rate, embryo survival, embryonic development, hatchability and early fry survival in channel catfish, Ictalurus punctatus. Guide RNAs targeting two of the channel catfish immune-related genes, toll/interleukin 1 receptor domain-containing adapter molecule (TICAM 1) and rhamnose binding lectin (RBL) genes, were designed and prepared. Three dosages of gRNA/Cas9 protein (low, 2.5 ng gRNA/7.5 ng Cas9, medium, 5 ng gRNA/15 ng Cas9 and high, 7.5 ng gRNA/22.5 ng Cas9) were microinjected into the yolk of one-cell embryos. Mutation rate increased with higher dosages (p < 0.05). Higher dosages increased the mutation frequency in individual embryos where biallelic mutations were detected. For both genes, microinjection procedures increased the embryo mortality (p < 0.05). Increasing the dosage of gRNA/Cas9 protein increased the embryo mortality and reduced the hatching percent (p < 0.05). Embryonic development was delayed when gRNAs targeting RBL gene were injected. Means of fry survival time were similar for different dosages (p > 0.05). The current results lay the foundations for designing gene editing experiments in channel catfish and can be used as a guide for other fish species.

Indexed as

CRISPR-Cas SystemsMutationMutation RateAdaptor Proteins, Vesicular TransportAnimalsBase SequenceChromosomal Proteins, Non-HistoneCongenital AbnormalitiesEmbryonic DevelopmentGenetic Association StudiesGenetic Predisposition to DiseaseIctaluridaeMortalityOpen Reading FramesPhenotypeReproductionAdaptor Proteins, Vesicular TransportChromosomal Proteins, Non-Histone

Identifiers

PMID30405210
PMCPMC6220201
OpenAlexW2899381247

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.