Evidence map›Paper›PMID 30405208›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2019

Genomic mosaicism in the pathogenesis and inheritance of a Rett syndrome cohort.

Qingping Zhang, Xiaoxu Yang, Jiaping Wang, Jiarui Li, Qixi Wu, Yongxin Wen, Ying Zhao, Xiaoying Zhang, He Yao, Xiru Wu and 3 more

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 41 citations in OpenAlex.

  1. Review
  2. Article
  3. [Sperm Mosaic Variants and Their Influence on the Offspring].Sichuan da xue xue bao. Yi xue ban = Journal of Sichuan University. Medical science edition · 2024
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  16. In Silico Study of Rett Syndrome Treatment-Related Genes,International journal of molecular sciences · 2019
    Article
  17. Article
  18. International journal of molecular sciences · 2019
    Review
  19. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Qingping ZhangDepartment of Pediatrics, Peking University First Hospital, Beijing, China.
Xiaoxu YangCenter for Bioinformatics, State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Peking University, Beijing, China.
Jiaping WangDepartment of Pediatrics, Peking University First Hospital, Beijing, China.
Jiarui LiCenter for Bioinformatics, State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Peking University, Beijing, China.
Qixi WuCenter for Bioinformatics, State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Peking University, Beijing, China.
Yongxin WenDepartment of Pediatrics, Peking University First Hospital, Beijing, China.
Ying ZhaoDepartment of Pediatrics, Peking University First Hospital, Beijing, China.
Xiaoying ZhangDepartment of Pediatrics, Peking University First Hospital, Beijing, China.
He YaoPeking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, China.
Xiru WuDepartment of Pediatrics, Peking University First Hospital, Beijing, China.
Shujie YuDepartment of Neurology, Harbin Children's Hospital, Harbin, China.
Liping WeiCenter for Bioinformatics, State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Peking University, Beijing, China. weilp@pku.edu.cn.
Xinhua BaoDepartment of Pediatrics, Peking University First Hospital, Beijing, China. zwhang@pku.edu.cn.
Peking University · CNPeking University First Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeTo determine the role of mosaicism in the pathogenesis and inheritance of Rett and Rett-like disorders.

methodsWe recruited 471 Rett and Rett-like patients. Panel-sequencing targeting MECP2, CDKL5, and FOXG1 was performed. Mosaicism was quantified in 147 patients by a Bayesian genotyper. Candidates were validated by amplicon sequencing and digital PCR. Germline mosaicism of 21 fathers with daughters carrying pathogenic MECP2 variants was further quantified.

resultsPathogenic variants of MECP2/CDKL5/FOXG1 were found in 324/471 (68.7%) patients. Somatic MECP2 mosaicism was confirmed in 5/471 (1.1%) patients, including 3/18 males (16.7%) and 2/453 females (0.4%). Three of the five patients with somatic MECP2 mosaicism had mosaicism at MECP2-Arg106. Germline MECP2 mosaicism was detected in 5/21 (23.8%) fathers.

conclusionThis is the first systematic screening of somatic and paternal germline MECP2 mosaicism at a cohort level. Our findings indicate that somatic MECP2 mosaicism contributes directly to the pathogenicity of Rett syndrome, especially in male patients. MECP2-Arg106 might be a mosaic hotspot. The high proportion of paternal germline MECP2 mosaicism indicates an underestimated mechanism underlying the paternal origin bias of MECP2 variants. Finally, this study provides an empirical foundation for future studies of genetic disorders caused by de novo variations of strong paternal origin.

Indexed as

MosaicismAdultBayes TheoremChild, PreschoolCohort StudiesDatabases, GeneticFathersFemaleForkhead Transcription FactorsGenomicsGenotypeGerm-Line MutationHeredityHumansMaleMethyl-CpG-Binding Protein 2CDKL5 protein, humanForkhead Transcription FactorsFOXG1 protein, humanMECP2 protein, humanMethyl-CpG-Binding Protein 2Nerve Tissue ProteinsProtein Serine-Threonine KinasesMECP2paternal germline mosaicismRett syndromesomatic mosaicism

Identifiers

PMID30405208
PMCPMC6752670
OpenAlexW2900409345

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.