Evidence map›Paper›PMID 30404043›Full record

ArticleGene expression patterns : GEP2018

A tissue-specific enhancer of the C. elegans nhr-67/tailless gene drives coordinated expression in uterine stem cells and the differentiated anchor cell.

Shari Bodofsky, Katarina Liberatore, Lauren Pioppo, Dominic Lapadula, Lily Thompson, Susanna Birnbaum, George McClung, Akshara Kartik, Sheila Clever, Bruce Wightman

Abstract read
In one paragraph

Article in Gene expression patterns : GEP, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.3field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Deletion of a putative HDA-1 binding site in themicroPublication biology · 2021
    Article
  6. A developmental gene regulatory network forDevelopment (Cambridge, England) · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Shari BodofskyBiology Department, Muhlenberg College, Allentown, PA, 18104, USA. Electronic address: shari.bodofsky@gmail.com.
Katarina LiberatoreBiology Department, Muhlenberg College, Allentown, PA, 18104, USA. Electronic address: kl251229@muhlenberg.edu.
Lauren PioppoBiology Department, Muhlenberg College, Allentown, PA, 18104, USA. Electronic address: lauren.pioppo@gmail.com.
Dominic LapadulaBiology Department, Muhlenberg College, Allentown, PA, 18104, USA. Electronic address: djl019@jefferson.edu.
Lily ThompsonBiology Department, Muhlenberg College, Allentown, PA, 18104, USA. Electronic address: lt250249@muhlenberg.edu.
Susanna BirnbaumBiology Department, Muhlenberg College, Allentown, PA, 18104, USA. Electronic address: sb249945@muhlenberg.edu.
George McClungBiology Department, Muhlenberg College, Allentown, PA, 18104, USA. Electronic address: george.mcclung@gmail.com.
Akshara KartikBiology Department, Muhlenberg College, Allentown, PA, 18104, USA. Electronic address: kartikakshara22@gmail.com.
Sheila CleverBiology Department, Muhlenberg College, Allentown, PA, 18104, USA. Electronic address: sheilaclever@aol.com.
Bruce WightmanBiology Department, Muhlenberg College, Allentown, PA, 18104, USA. Electronic address: wightman@muhlenberg.edu.
Muhlenberg College · US

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
Transcriptional Regulation of Cell Differentiation in C. elegans by TaillessR15GM107799 · NIGMS · MUHLENBERG COLLEGE · PI WIGHTMAN, BRUCE · 2014 to 2014
$286k
NIGMS NIH HHS R15 GM107799NIH HHS P40 OD010440
6 · The paper itself

Abstract

The nhr-67 nuclear receptor gene of Caenorhabditis elegans encodes the ortholog of the Drosophila tailless and vertebrate Tlx genes. In C. elegans, nhr-67 plays multiple roles in the development of the uterus during L2 and L3 larval stages. Four pre-VU cells are born in the L2 stage and form the precursor complement for the ventral surface of the mature uterus. One of the four pre-VU cells becomes the anchor cell (AC), which exits the cell cycle and differentiates, while the remaining three VU cells serve as stem cells that populate the ventral uterus. The nhr-67 gene functions in the development of both VU cell lineages and AC differentiation. Hypomorphic mutations in nhr-67 identify a 276bp region of the distal promoter that is sufficient to activate nhr-67 expression in pre-VU cells and the AC. The 276bp region includes 8 conserved potential cis-acting sites, including two E boxes and a nuclear receptor binding site. Mutational analysis demonstrates that the two E boxes are required for expression of nhr-67 in uterine precursor cells. The E/daughterless ortholog HLH-2 binds these sites as a homodimer, thus playing a central role in activating nhr-67 expression in the uterine precursors. At least two other binding activities, one of which may be the nhr-25/Ftz-F1 nuclear receptor transcription factor, also contribute to uterine precursor cell expression. The organization of the nhr-67 uterine precursor enhancer is compared to similar conserved enhancers in the egl-43, lag-2, and lin-3 genes, which contain the same HLH-2-binding E boxes and are similarly expressed in both pre-VU cells and the AC. This basic regulatory module allows the coordinated expression of at least four genes. Expression of genes in different cells that must coordinate to form a mature organ is driven by a shared set of promoter elements, which integrate multiple transcription factor inputs.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsCell DifferentiationCell LineageCells, CulturedFemaleOrganogenesisOrgan SpecificityReceptors, Cytoplasmic and NuclearStem CellsUterusCaenorhabditis elegans ProteinsNhr-67 protein, C elegansReceptors, Cytoplasmic and Nuclear

Identifiers

PMID30404043
PMCPMC6373727
OpenAlexW2898854067

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.