Evidence map›Paper›PMID 30403691›Full record

ArticlePloS one2018

DNMTs and SETDB1 function as co-repressors in MAX-mediated repression of germ cell-related genes in mouse embryonic stem cells.

Daiki Tatsumi, Yohei Hayashi, Mai Endo, Hisato Kobayashi, Takumi Yoshioka, Kohei Kiso, Shinichiro Kanno, Yuji Nakai, Ikuma Maeda, Kentaro Mochizuki and 6 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 23 citations in OpenAlex.

  1. The Many Faces of SetDB1.Epigenomes · 2026
    Review
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  7. Article
  8. Article
  9. Article
  10. Article
  11. Kaiso Regulates DNA Methylation Homeostasis.International journal of molecular sciences · 2021
    Article
  12. Article
  13. Article
  14. Article
  15. On transposons and totipotency.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 1 country.

Daiki TatsumiCell Resource Center for Biomedical Research, Institute of Development, Aging and Cancer (IDAC), Tohoku University, Sendai, Miyagi, Japan.
Yohei HayashiCell Resource Center for Biomedical Research, Institute of Development, Aging and Cancer (IDAC), Tohoku University, Sendai, Miyagi, Japan.
Mai EndoCell Resource Center for Biomedical Research, Institute of Development, Aging and Cancer (IDAC), Tohoku University, Sendai, Miyagi, Japan.
Hisato KobayashiNODAI Genome Research Center, Tokyo University of Agriculture, Setagaya-ku, Tokyo, Japan.
Takumi YoshiokaDepartment of Bioscience, Tokyo University of Agriculture, Setagaya-ku, Tokyo, Japan.
Kohei KisoCell Resource Center for Biomedical Research, Institute of Development, Aging and Cancer (IDAC), Tohoku University, Sendai, Miyagi, Japan.
Shinichiro KannoDivision of Dynamic Proteome in Cancer and Aging, Institute of Development, Aging and Cancer, Tohoku University, Sendai, Miyagi, Japan.
Yuji NakaiInstitute for Food Sciences, Hirosaki University, Hirosaki, Aomori, Japan.
Ikuma MaedaCell Resource Center for Biomedical Research, Institute of Development, Aging and Cancer (IDAC), Tohoku University, Sendai, Miyagi, Japan.
Kentaro MochizukiCell Resource Center for Biomedical Research, Institute of Development, Aging and Cancer (IDAC), Tohoku University, Sendai, Miyagi, Japan.
Makoto TachibanaDepartment of Enzyme Chemistry, Institute for Enzyme Research, Tokushima University, Shinkura-cho, Tokushima, Japan.
Haruhiko KosekiLaboratory for Developmental Genetics, RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa, Japan.
Akihiko OkudaDivision of Developmental Biology, Research Center for Genomic Medicine, Saitama Medical University, Yamane Hidaka, Saitama, Japan.
Akira YasuiDivision of Dynamic Proteome in Cancer and Aging, Institute of Development, Aging and Cancer, Tohoku University, Sendai, Miyagi, Japan.
Tomohiro KonoDepartment of Bioscience, Tokyo University of Agriculture, Setagaya-ku, Tokyo, Japan.
Yasuhisa MatsuiCell Resource Center for Biomedical Research, Institute of Development, Aging and Cancer (IDAC), Tohoku University, Sendai, Miyagi, Japan.ORCID 0000-0001-7026-6355
Tohoku University · JPTokyo University of Agriculture · JPHirosaki University · JPRIKEN Center for Integrative Medical Sciences · JPSaitama Medical University · JPTokushima University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In embryonic stem cells (ESCs), the expression of development-related genes, including germ cell-related genes, is globally repressed. The transcription factor MAX represses germ cell-related gene expression in ESCs via PCGF6-polycomb repressive complex 1 (PRC1), which consists of several epigenetic factors. However, we predicted that MAX represses germ cell-related gene expression through several additional mechanisms because PCGF6-PRC1 regulates the expression of only a subset of genes repressed by MAX. Here, we report that MAX associated with DNA methyltransferases (DNMTs) and the histone methyltransferase SETDB1 cooperatively control germ cell-related gene expression in ESCs. Both DNA methylation and histone H3 lysine 9 tri-methylation of the promoter regions of several germ cell-related genes were not affected by knockout of the PRC1 components, indicating that the MAX-DNMT and MAX-SETDB1 pathways are independent of the PCGF6-PRC1 pathway. Our findings provide insights into our understanding of MAX-based repressive mechanisms of germ cell-related genes in ESCs.

Indexed as

Gene Expression RegulationAnimalsBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsBiomarkersChemical FractionationCo-Repressor ProteinsDNA (Cytosine-5-)-MethyltransferasesDNA MethylationGerm CellsHistone-Lysine N-MethyltransferaseHistonesLysineMethylationMiceMice, KnockoutMouse Embryonic Stem CellsBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsBiomarkersCo-Repressor ProteinsDNA (Cytosine-5-)-MethyltransferasesHistone-Lysine N-MethyltransferaseHistonesLysineMax protein, mouseMultiprotein ComplexesPcgf6 protein, mousePolycomb Repressive Complex 1SETDB1 protein, mouse

Identifiers

PMID30403691
PMCPMC6221296
OpenAlexW2900100142

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.