Evidence map›Paper›PMID 30403372›Full record

ArticleeLife2018

Germline VRC01 antibody recognition of a modified clade C HIV-1 envelope trimer and a glycosylated HIV-1 gp120 core.

Andrew J Borst, Connor E Weidle, Matthew D Gray, Brandon Frenz, Joost Snijder, M Gordon Joyce, Ivelin S Georgiev, Guillaume Be Stewart-Jones, Peter D Kwong, Andrew T McGuire and 4 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
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  9. Prevention, treatment and cure of HIV infection.Nature reviews. Microbiology · 2023
    Review
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  12. Article
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  14. Article
  15. In vitro affinity maturation of broader and more-potent variants of the HIV-1-neutralizing antibody CAP256-VRC26.25.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  16. Article
  17. Article
  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Andrew J BorstDepartment of Biochemistry, University of Washington, Seattle, United States.ORCID https://orcid.org/0000-0003-4297-7824
Connor E WeidleVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, United States.
Matthew D GrayVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, United States.
Brandon FrenzDepartment of Biochemistry, University of Washington, Seattle, United States.
Joost SnijderDepartment of Biochemistry, University of Washington, Seattle, United States.
M Gordon JoyceVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, United States.
Ivelin S GeorgievVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, United States.
Guillaume Be Stewart-JonesVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, United States.
Peter D KwongVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, United States.
Andrew T McGuireVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, United States.
Frank DiMaioDepartment of Biochemistry, University of Washington, Seattle, United States.ORCID http://orcid.org/0000-0002-7524-8938
Leonidas StamatatosVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, United States.
Marie PanceraVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, United States.
David VeeslerDepartment of Biochemistry, University of Washington, Seattle, United States.ORCID http://orcid.org/0000-0002-6019-8675
University of Washington · USNational Institutes of Health · USFred Hutch Cancer Center · US

Funding

Preclinical Evaluation of Envelope Immunogens Optimized to Elicit VRCOI-class AnU19AI109632 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI STAMATATOS, LEONIDAS · 2014 to 2020
$25.1M
Design Of ImmunogensZIAAI005024 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI ZHOU, TONGQING · 2009 to 2025
$21.5M
Structure/function studies of immunogen recognition by anti-HIV antibody b12P01AI094419 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI STAMATATOS, LEONIDAS · 2011 to 2015
$10.6M
TRAINING IN MOLECULAR BIOPHYSICST32GM008268 · NIGMS · UNIVERSITY OF WASHINGTON · PI KOLLMAN, JUSTIN M, ZHENG, NING · 1988 to 2023
$8.6M
Defining BCR evolution during immunizationR01AI104384 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI STAMATATOS, LEONIDAS · 2013 to 2021
$5.9M
Monitoring the development of anti-Env Abs during HIV infectionR01AI081625 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI STAMATATOS, LEONIDAS · 2010 to 2020
$5.8M
West/Midwest Consortium for High-Resolution Cryo Electron MicroscopyU24GM116792 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI AGBANDJE-MCKENNA, MAVIS, DOKLAND, TERJE · 2016 to 2020
$3.0M
Protein structure determination from low-resolution experimental dataR01GM123089 · NIGMS · UNIVERSITY OF WASHINGTON · PI DIMAIO, FRANK P · 2017 to 2025
$2.6M
Structural Studies of Coronavirus Fusion ProteinsR01GM120553 · NIGMS · UNIVERSITY OF WASHINGTON · PI VEESLER, DAVID · 2016 to 2020
$1.7M
HIGH-END CRYOEM INSTRUMENT FOR UCLA ELECTRON IMAGING CTR FOR NANOMACHINES: AIDSS10RR023057 · NCRR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ZHOU, Z HONG · 2006 to 2006
$1.6M
Direct Detection Device for atomic resolution cryoEM of macromolecular complexesS10OD018111 · OD · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ZHOU, Z HONG · 2014 to 2014
$598k
National Institute of Allergy and Infectious Diseases P01 AI094419National Institute of Allergy and Infectious Diseases R01 AI081625National Institute of Allergy and Infectious Diseases R01AI081625National Institute of Allergy and Infectious Diseases R01 AI104384National Institute of Allergy and Infectious Diseases U19 AI109632NCRR NIH HHS S10 RR023057NIAID NIH HHS P01 AI094419NIAID NIH HHS R01 AI081625NIAID NIH HHS R01 AI104384NIAID NIH HHS U19 AI109632NIGMS NIH HHS R01 GM120553NIGMS NIH HHS R01GM120553NIGMS NIH HHS R01 GM123089NIGMS NIH HHS T32 GM008268NIGMS NIH HHS T32GM008268NIGMS NIH HHS U24 GM116792NIH HHS S10 OD018111
6 · The paper itself

Abstract

VRC01 broadly neutralizing antibodies (bnAbs) target the CD4-binding site (CD4

Indexed as

Protein MultimerizationAmino Acid SequenceAntibodiesGerm CellsGlycosylationHEK293 CellsHIV-1HIV Envelope Protein gp120HumansImmunoglobulin Fab FragmentsImmunoglobulin GModels, MolecularPolysaccharidesProtein BindingProtein Structure, SecondaryAntibodiesHIV Envelope Protein gp120Immunoglobulin Fab FragmentsImmunoglobulin GPolysaccharidescryoEMcrystallographyfusion proteinglycan shieldHIVHIV envelopemolecular biophysicsstructural biologyvirusVRC01

Identifiers

PMID30403372
PMCPMC6237438
OpenAlexW2899687428

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.