Evidence map›Paper›PMID 30402543›Full record

ArticleScience advances2018

Multiple modes of PRC2 inhibition elicit global chromatin alterations in H3K27M pediatric glioma.

James M Stafford, Chul-Hwan Lee, Philipp Voigt, Nicolas Descostes, Ricardo Saldaña-Meyer, Jia-Ray Yu, Gary Leroy, Ozgur Oksuz, Jessica R Chapman, Fernando Suarez and 7 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 116 papers.

0numbers the graph read from it
0cells of the map it votes in
116citing papers in PubMed
12.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

116 citing papers in PubMed, 189 citations in OpenAlex.

  1. Article
  2. Review
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  4. Article
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  6. PDS5A and TOP2B cooperate for chromatin recruitment via CTCF.bioRxiv : the preprint server for biology · 2026
    Article
  7. Article
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  10. Review
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  16. Review
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  18. Article
  19. Investigating oncoprotein-mediated chromatin dysregulation inbioRxiv : the preprint server for biology · 2025
    Article
  20. Article

56 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 1 country.

James M StaffordDepartment of Biochemistry and Molecular Pharmacology, NYUSoM, New York, NY, USA.ORCID 0000-0002-1435-6898
Chul-Hwan LeeDepartment of Biochemistry and Molecular Pharmacology, NYUSoM, New York, NY, USA.ORCID 0000-0003-0643-0100
Philipp VoigtDepartment of Biochemistry and Molecular Pharmacology, NYUSoM, New York, NY, USA.ORCID 0000-0003-4366-0490
Nicolas DescostesDepartment of Biochemistry and Molecular Pharmacology, NYUSoM, New York, NY, USA.ORCID 0000-0001-5599-5808
Ricardo Saldaña-MeyerDepartment of Biochemistry and Molecular Pharmacology, NYUSoM, New York, NY, USA.ORCID 0000-0001-8431-2682
Jia-Ray YuDepartment of Biochemistry and Molecular Pharmacology, NYUSoM, New York, NY, USA.ORCID 0000-0002-7080-4333
Gary LeroyDepartment of Biochemistry and Molecular Pharmacology, NYUSoM, New York, NY, USA.
Ozgur OksuzDepartment of Biochemistry and Molecular Pharmacology, NYUSoM, New York, NY, USA.ORCID 0000-0001-8393-8501
Jessica R ChapmanProteomics Laboratory, NYUSoM, New York, NY, USA.ORCID 0000-0002-4080-8667
Fernando SuarezLaura and Isaac Perlmutter Cancer Center, NYUSoM, New York, NY, USA.ORCID 0000-0003-1005-2210
Aram S ModrekLaura and Isaac Perlmutter Cancer Center, NYUSoM, New York, NY, USA.ORCID 0000-0001-7586-9833
N Sumru BayinLaura and Isaac Perlmutter Cancer Center, NYUSoM, New York, NY, USA.
Dimitris G PlacantonakisLaura and Isaac Perlmutter Cancer Center, NYUSoM, New York, NY, USA.ORCID 0000-0003-1950-2978
Matthias A KarajannisLaura and Isaac Perlmutter Cancer Center, NYUSoM, New York, NY, USA.ORCID 0000-0002-7151-6528
Matija SnuderlLaura and Isaac Perlmutter Cancer Center, NYUSoM, New York, NY, USA.
Beatrix UeberheideDepartment of Biochemistry and Molecular Pharmacology, NYUSoM, New York, NY, USA.ORCID 0000-0003-2512-0204
Danny ReinbergDepartment of Biochemistry and Molecular Pharmacology, NYUSoM, New York, NY, USA.ORCID 0000-0003-4288-2016
Howard Hughes Medical Institute · USNYU Langone’s Laura and Isaac Perlmutter Cancer CenterNew York Stem Cell Foundation · US

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ADRIANA HEGUY · 1985 to 2026
$83.1M
MEDICAL SCIENTIST TRAININGT32GM007308 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI PHILIPS, MARK REID · 1985 to 2019
$23.2M
Repression via Facultative HeterochromatinR01CA199652 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI REINBERG, DANNY · 2015 to 2025
$4.2M
AUTS2 and the chromatin dynamics of alcohol use disordersK99AA024837 · NIAAA · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI STAFFORD, JAMES M · 2017 to 2018
$328k
NCI NIH HHS P30 CA016087NCI NIH HHS R01 CA199652NIAAA NIH HHS K99 AA024837NIGMS NIH HHS T32 GM007308
6 · The paper itself

Abstract

A methionine substitution at lysine-27 on histone H3 variants (H3K27M) characterizes ~80% of diffuse intrinsic pontine gliomas (DIPG) and inhibits polycomb repressive complex 2 (PRC2) in a dominant-negative fashion. Yet, the mechanisms for this inhibition and abnormal epigenomic landscape have not been resolved. Using quantitative proteomics, we discovered that robust PRC2 inhibition requires levels of H3K27M greatly exceeding those of PRC2, seen in DIPG. While PRC2 inhibition requires interaction with H3K27M, we found that this interaction on chromatin is transient, with PRC2 largely being released from H3K27M. Unexpectedly, inhibition persisted even after PRC2 dissociated from H3K27M-containing chromatin, suggesting a lasting impact on PRC2. Furthermore, allosterically activated PRC2 is particularly sensitive to H3K27M, leading to the failure to spread H3K27me from PRC2 recruitment sites and consequently abrogating PRC2's ability to establish H3K27me2-3 repressive chromatin domains. In turn, levels of polycomb antagonists such as H3K36me2 are elevated, suggesting a more global, downstream effect on the epigenome. Together, these findings reveal the conditions required for H3K27M-mediated PRC2 inhibition and reconcile seemingly paradoxical effects of H3K27M on PRC2 recruitment and activity.

Indexed as

AnimalsBrain Stem NeoplasmsCells, CulturedChildChromatinDisease Models, AnimalEmbryonic Stem CellsGliomaHistonesHumansLysineMicePolycomb Repressive Complex 2ChromatinHistonesLysinePolycomb Repressive Complex 2

Identifiers

PMID30402543
PMCPMC6209383
OpenAlexW2894727721

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.