Evidence map›Paper›PMID 30401901›Full record

ArticleNature communications2018

Structural basis of Gip1 for cytosolic sequestration of G protein in wide-range chemotaxis.

Takero Miyagawa, Hiroyasu Koteishi, Yoichiro Kamimura, Yukihiro Miyanaga, Kohei Takeshita, Atsushi Nakagawa, Masahiro Ueda

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 1 country.

Takero MiyagawaGraduate School of Frontier Biosciences, Osaka University, Suita, Osaka, 565-0871, Japan.
Hiroyasu KoteishiCenter for Biosystems Dynamics Research (BDR), RIKEN, Suita, Osaka, 565-0874, Japan.ORCID http://orcid.org/0000-0001-5115-0963
Yoichiro KamimuraCenter for Biosystems Dynamics Research (BDR), RIKEN, Suita, Osaka, 565-0874, Japan. ykamimur@riken.jp.
Yukihiro MiyanagaGraduate School of Frontier Biosciences, Osaka University, Suita, Osaka, 565-0871, Japan.
Kohei TakeshitaInstitute for Protein Research, Osaka University, Suita, 565-0871, Japan.
Atsushi NakagawaInstitute for Protein Research, Osaka University, Suita, 565-0871, Japan.ORCID http://orcid.org/0000-0002-1700-7861
Masahiro UedaGraduate School of Frontier Biosciences, Osaka University, Suita, Osaka, 565-0871, Japan. masahiroueda@fbs.osaka-u.ac.jp.ORCID http://orcid.org/0000-0002-9354-3404
RIKEN Center for Biosystems Dynamics Research · JPProtein Research Foundation · JPSPring-8 · JPThe University of Osaka · JPUniversity of Hyogo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

G protein interacting protein 1 (Gip1) binds and sequesters heterotrimeric G proteins in the cytosolic pool, thus regulating G protein-coupled receptor (GPCR) signalling for eukaryotic chemotaxis. Here, we report the underlying structural basis of Gip1 function. The crystal structure reveals that the region of Gip1 that binds to the G protein has a cylinder-like fold with a central hydrophobic cavity composed of six α-helices. Mutagenesis and biochemical analyses indicate that the hydrophobic cavity and the hydrogen bond network at the entrance of the cavity are essential for complex formation with the geranylgeranyl modification on the Gγ subunit. Mutations of the cavity impair G protein sequestration and translocation to the membrane from the cytosol upon receptor stimulation, leading to defects in chemotaxis at higher chemoattractant concentrations. These results demonstrate that the Gip1-dependent regulation of G protein shuttling ensures wide-range gradient sensing in eukaryotic chemotaxis.

Indexed as

Chemotactic FactorsChemotaxisCrystallography, X-RayCytosolDictyosteliumEukaryotaGTP-Binding ProteinsHeterotrimeric GTP-Binding ProteinsHydrogen BondingModels, MolecularMutagenesisMutationProtein BindingProtein ConformationProtein Interaction Domains and MotifsProtein Phosphatase 1Chemotactic FactorsGIP1 protein, S cerevisiaeGTP-Binding ProteinsHeterotrimeric GTP-Binding ProteinsProtein Phosphatase 1Receptors, G-Protein-CoupledSaccharomyces cerevisiae Proteins

Identifiers

PMID30401901
PMCPMC6219514
OpenAlexW2897773842

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.