Evidence map›Paper›PMID 30401797›Full record

ArticleScientific reports2018

Single molecule tracking reveals spatio-temporal dynamics of bacterial DNA repair centres.

Thomas C Rösch, Stephan Altenburger, Luis Oviedo-Bocanegra, Miriam Pediaditakis, Nina El Najjar, Georg Fritz, Peter L Graumann

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 23 citations in OpenAlex.

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  14. Real-Time Messenger RNA Dynamics inFrontiers in microbiology · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Thomas C RöschSYNMIKRO, LOEWE Center for Synthetic Microbiology, Marburg, Germany.
Stephan AltenburgerSYNMIKRO, LOEWE Center for Synthetic Microbiology, Marburg, Germany.
Luis Oviedo-BocanegraSYNMIKRO, LOEWE Center for Synthetic Microbiology, Marburg, Germany.ORCID http://orcid.org/0000-0002-8706-858X
Miriam PediaditakisSYNMIKRO, LOEWE Center for Synthetic Microbiology, Marburg, Germany.
Nina El NajjarSYNMIKRO, LOEWE Center for Synthetic Microbiology, Marburg, Germany.
Georg FritzSYNMIKRO, LOEWE Center for Synthetic Microbiology, Marburg, Germany.
Peter L GraumannSYNMIKRO, LOEWE Center for Synthetic Microbiology, Marburg, Germany. peter.graumann@synmikro.uni-marburg.de.
Philipps University of Marburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Single-particle (molecule) tracking (SPT/SMT) is a powerful method to study dynamic processes in living bacterial cells at high spatial and temporal resolution. We have performed single-molecule imaging of early DNA double-strand break (DSB) repair events during homologous recombination in the model bacterium Bacillus subtilis. Our findings reveal that DNA repair centres arise at all sites on the chromosome and that RecN, RecO and RecJ perform fast, enzyme-like functions during detection and procession of DNA double strand breaks, respectively. Interestingly, RecN changes its diffusion behavior upon induction of DNA damage, from a largely diffusive to a DNA-scanning mode, which increases efficiency of finding all sites of DNA breaks within a frame of few seconds. RecJ continues being bound to replication forks, but also assembles at many sites on the nucleoid upon DNA damage induction. RecO shows a similar change in its mobility as RecN, and also remains bound to sites of damage for few hundred milliseconds. Like RecN, it enters the nucleoid in damaged cells. Our data show that presynaptic preparation of DSBs including loading of RecA onto ssDNA is highly rapid and dynamic, and occurs throughout the chromosome, and not only at replication forks or only at distinct sites where many breaks are processes in analogy to eukaryotic DNA repair centres.

Indexed as

DNA RepairSpatio-Temporal AnalysisBacillus subtilisBacterial ProteinsCell TrackingDNA, BacterialDNA Breaks, Double-StrandedDNA DamageHomologous RecombinationImage Processing, Computer-AssistedRecombination, GeneticSingle Molecule ImagingBacterial ProteinsDNA, Bacterial

Identifiers

PMID30401797
PMCPMC6219548
OpenAlexW2898661428

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.