ArticlePlant physiology2019
Long-Read Annotation: Automated Eukaryotic Genome Annotation Based on Long-Read cDNA Sequencing.
Article in Plant physiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
35 citing papers in PubMed.
- High-quality genome ofPlant diversity · 2026Article
- Eukan: a fully automated nuclear genome annotation pipeline for less studied and divergent eukaryotes.NAR genomics and bioinformatics · 2026Article
- Near telomere-to-telomere (T2T) level genome assembly of the critically endangered plant Magnolia zenii (Magnoliaceae).Scientific data · 2025Article
- Long-read sequencing transcriptome quantification with lr-kallisto.PLoS computational biology · 2025Article
- High quality chromosome level genome assembly of Camellia fascicularis, an endangered plant in China.Scientific data · 2025Article
- Evaluation of strategies for evidence-driven genome annotation using long-read RNA-seq.Genome research · 2025Article
- Comprehensive genome annotation of the model ciliate Tetrahymena thermophila by in-depth epigenetic and transcriptomic profiling.Nucleic acids research · 2025Article
- A nearly telomere-to-telomere diploid genome assembly of Firmiana kwangsiensis, a threatened species in China.Scientific data · 2024Article
- Annotation and visualization of parasite, fungi and arthropod genomes with Companion.Nucleic acids research · 2024Article
- GeneMark-ETP significantly improves the accuracy of automatic annotation of large eukaryotic genomes.Genome research · 2024Article
- A new gene finding tool GeneMark-ETP significantly improves the accuracy of automatic annotation of large eukaryotic genomes.bioRxiv : the preprint server for biology · 2024Article
- Dynamic DNAGenome research · 2024Article
- A chromosome-level genome assembly for Onobrychis viciifolia reveals gene copy number gain underlying enhanced proanthocyanidin biosynthesis.Communications biology · 2024Article
- Current technical advancements in plant epitranscriptomic studies.The plant genome · 2023Review
- Novel and improved Caenorhabditis briggsae gene models generated by community curation.BMC genomics · 2023Article
- Genome annotation: From human genetics to biodiversity genomics.Cell genomics · 2023Review
- Chromosome-level Genome Assembly and Sex-specific Differential Transcriptome of the White-backed Planthopper,Current genomics · 2023Article
- De Novo Assembly and Annotation of 11 Diverse Shrub Willow (International journal of molecular sciences · 2023Article
- Genome assembly of Musa beccarii shows extensive chromosomal rearrangements and genome expansion during evolution of Musaceae genomes.GigaScience · 2022Article
- annotate_my_genomes: an easy-to-use pipeline to improve genome annotation and uncover neglected genes by hybrid RNA sequencing.GigaScience · 2022Article
Corrections and comments
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Single-molecule full-length complementary DNA (cDNA) sequencing can aid genome annotation by revealing transcript structure and alternative splice forms, yet current annotation pipelines do not incorporate such information. Here we present long-read annotation (LoReAn) software, an automated annotation pipeline utilizing short- and long-read cDNA sequencing, protein evidence, and ab initio prediction to generate accurate genome annotations. Based on annotations of two fungal genomes (
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