Evidence map›Paper›PMID 30400232›Full record

ArticleGenes2018

Nucleotide Modifications Decrease Innate Immune Response Induced by Synthetic Analogs of snRNAs and snoRNAs.

Grigory Stepanov, Evgenii Zhuravlev, Victoria Shender, Anna Nushtaeva, Evgenia Balakhonova, Elena Mozhaeva, Marat Kasakin, Vladimir Koval, Alexander Lomzov, Marat Pavlyukov and 8 more

Open access · goldAbstract read
In one paragraph

Article in Genes, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 40 citations in OpenAlex.

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  13. miRNA therapeutics in precision oncology: a natural premium to nurture.Exploration of targeted anti-tumor therapy · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 1 country.

Grigory StepanovInstitute of Chemical Biology and Fundamental Medicine, Siberian Branch, Russian Academy of Sciences, 630090 Novosibirsk, Russia. stepanovga@niboch.nsc.ru.ORCID 0000-0003-3393-3192
Evgenii ZhuravlevInstitute of Chemical Biology and Fundamental Medicine, Siberian Branch, Russian Academy of Sciences, 630090 Novosibirsk, Russia. evgenijur@gmail.com.
Victoria ShenderShemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, 117997 Moscow, Russia. victoria.shender@gmail.com.ORCID 0000-0001-9156-2938
Anna NushtaevaInstitute of Chemical Biology and Fundamental Medicine, Siberian Branch, Russian Academy of Sciences, 630090 Novosibirsk, Russia. nushtaeva.anna@gmail.com.
Evgenia BalakhonovaInstitute of Chemical Biology and Fundamental Medicine, Siberian Branch, Russian Academy of Sciences, 630090 Novosibirsk, Russia. zendriya-87@mail.ru.
Elena MozhaevaInstitute of Chemical Biology and Fundamental Medicine, Siberian Branch, Russian Academy of Sciences, 630090 Novosibirsk, Russia. mozhaevaalena@gmail.com.
Marat KasakinInstitute of Chemical Biology and Fundamental Medicine, Siberian Branch, Russian Academy of Sciences, 630090 Novosibirsk, Russia. kassakinm@gmail.com.ORCID 0000-0003-0069-0040
Vladimir KovalInstitute of Chemical Biology and Fundamental Medicine, Siberian Branch, Russian Academy of Sciences, 630090 Novosibirsk, Russia. koval@niboch.nsc.ru.ORCID 0000-0002-2577-2184
Alexander LomzovInstitute of Chemical Biology and Fundamental Medicine, Siberian Branch, Russian Academy of Sciences, 630090 Novosibirsk, Russia. lomzov@niboch.nsc.ru.
Marat PavlyukovShemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, 117997 Moscow, Russia. marat.pav@mail.ru.
Irina MalyantsFederal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical-Biological Agency, 119435 Moscow, Russia. iricam@mail.ru.
Mikhail ZhorovInstitute of Chemical Biology and Fundamental Medicine, Siberian Branch, Russian Academy of Sciences, 630090 Novosibirsk, Russia. zhorovlbnk@yandex.ru.
Tatyana KabilovaInstitute of Chemical Biology and Fundamental Medicine, Siberian Branch, Russian Academy of Sciences, 630090 Novosibirsk, Russia. kabilova@niboch.nsc.ru.
Elena ChernolovskayaInstitute of Chemical Biology and Fundamental Medicine, Siberian Branch, Russian Academy of Sciences, 630090 Novosibirsk, Russia. elena_ch@niboch.nsc.ru.
Vadim GovorunFederal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical-Biological Agency, 119435 Moscow, Russia. vgovorun@yandex.ru.
Elena KuliginaInstitute of Chemical Biology and Fundamental Medicine, Siberian Branch, Russian Academy of Sciences, 630090 Novosibirsk, Russia. kuligina@niboch.nsc.ru.ORCID 0000-0003-3145-1878
Dmitry SemenovInstitute of Chemical Biology and Fundamental Medicine, Siberian Branch, Russian Academy of Sciences, 630090 Novosibirsk, Russia. semenov@niboch.nsc.ru.
Vladimir RichterInstitute of Chemical Biology and Fundamental Medicine, Siberian Branch, Russian Academy of Sciences, 630090 Novosibirsk, Russia. richter@niboch.nsc.ru.
Institute of Chemical Biology and Fundamental Medicine · RUNovosibirsk State University · RUInstitute of Bioorganic Chemistry · RUD. Mendeleyev University of Chemical Technology of Russia · RUFederal Medical-Biological Agency · RU

Funding

Russian Foundation for Basic Research 16-04-01414_a, 16-34-60136_mol_а_dk and 17-29-06056Russian Science Foundation 16-14-10284 and 16-15-10105the grant of the President of the Russian Federation for young researchers 6196.2018.4
6 · The paper itself

Abstract

Short nuclear regulatory RNAs play a key role in the main stages of maturation of the precursors of the major RNA species. Small nuclear RNAs (snRNAs) form the core of the spliceosome and are responsible for the splicing of pre-mRNA molecules. Small nucleolar RNAs (snoRNAs) direct post-transcriptional modification of pre-rRNAs. A promising strategy for the development of non-coding RNA (ncRNAs) mimicking molecules is the introduction of modified nucleotides, which are normally present in natural ncRNAs, into the structure of synthetic RNAs. We have created a set of snoRNAs and snRNA analogs and studied the effect of base modifications, specifically, pseudouridine (Ψ) and 5-methylcytidine (m⁵C), on the immune-stimulating and cytotoxic properties of these RNAs. Here, we performed a whole-transcriptome study of the influence of synthetic snoRNA analogs with various modifications on gene expression in human cells. Moreover, we confirmed the role of PKR in the recognition of snoRNA and snRNA analogs using the short hairpin RNA (shRNA) technique. We believe that the data obtained will contribute to the understanding of the role of nucleotide modification in ncRNA functions, and can be useful for creating the agents for gene regulation based on the structure of natural snoRNAs and snRNAs.

Indexed as

innate immune responsePKRRNA modificationRNA-Seqsmall nuclear RNAssmall nucleolar RNAssynthetic RNA analogs

Identifiers

PMID30400232
PMCPMC6266926
OpenAlexW2898697607

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.