Evidence map›Paper›PMID 30400189›Full record

ArticleMolecules (Basel, Switzerland)2018

Transcriptome Analysis of Gene Expression Patterns Potentially Associated with Premature Senescence in

Zhe Zhao, Yifan Li, Songchao Zhao, Jiawen Zhang, Hong Zhang, Bo Fu, Fan He, Mingqin Zhao, Pengfei Liu

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

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  7. Integrating transcriptome and metabolome reveals molecular networks involved in genetic and environmental variation in tobacco.DNA research : an international journal for rapid publication of reports on genes and genomes · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Zhe ZhaoCollege of Tobacco Science, Henan Agricultural University, Zhengzhou 450002, China. ycxyzz@126.com.
Yifan LiCollege of Tobacco Science, Henan Agricultural University, Zhengzhou 450002, China. liyifan81@163.com.
Songchao ZhaoCollege of Tobacco Science, Henan Agricultural University, Zhengzhou 450002, China. zhaosongchao1314@126.com.
Jiawen ZhangCollege of Tobacco Science, Henan Agricultural University, Zhengzhou 450002, China. zjw960212@163.com.
Hong ZhangCollege of Tobacco Science, Henan Agricultural University, Zhengzhou 450002, China. today.hong@163.com.
Bo FuCollege of Tobacco Science, Henan Agricultural University, Zhengzhou 450002, China. fubo0527@126.com.
Fan HeCollege of Tobacco Science, Henan Agricultural University, Zhengzhou 450002, China. hefan.87@163.com.ORCID 0000-0002-7555-9488
Mingqin ZhaoCollege of Tobacco Science, Henan Agricultural University, Zhengzhou 450002, China. zhaomingqin@126.com.
Pengfei LiuCollege of Tobacco Science, Henan Agricultural University, Zhengzhou 450002, China. liupengfei523@126.com.
Henan Agricultural University · CN

Funding

Jiangxi Tobacco Corporation 201401006
6 · The paper itself

Abstract

Senescence affects the remobilization of nutrients and adaption of the plant to the environment. Combined stresses can result in premature senescence in plants which exist in the field. In this study, transcriptomic analysis was performed on mature leaves and leaves in three stages of premature senescence to understand the molecular mechanism. With progressive premature senescence, a declining chlorophyll (chl) content and an increasing malonaldehyde (MDA) content were observed, while plasmolysis and cell nucleus pyknosis occurred, mitochondria melted, thylakoid lamellae were dilated, starch grains in chloroplast decreased, and osmiophilic granules increased gradually. Moreover, in total 69 common differentially expressed genes (DEGs) in three stages of premature senescing leaves were found, which were significantly enriched in summarized Gene Ontology (GO) terms of membrane-bounded organelle, regulation of cellular component synthesis and metabolic and biosynthetic processes. The Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis suggested that the plant hormone signal transduction pathway was significantly enriched. The common DEGs and four senescence-related pathways, including plant hormone signal transduction, porphyrin and chlorophyll metabolism, carotenoid biosynthesis, and regulation of autophagy were selected to be discussed further. This work aimed to provide potential genes signaling and modulating premature senescence as well as the possible dynamic network of gene expression patterns for further study.

Indexed as

Gene Expression ProfilingGene Expression Regulation, PlantTranscriptomeAgingComputational BiologyNicotianaPhenotypePlant Growth RegulatorsPlant LeavesPlant Growth Regulatorsplant hormonepremature senescencetobaccotranscriptomeultrastructure

Identifiers

PMID30400189
PMCPMC6278766
OpenAlexW2899076366

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.