Evidence map›Paper›PMID 30398619›Full record

ArticleGenome biology and evolution2018

Conjugative Transposons and Their Cargo Genes Vary across Natural Populations of Rickettsia buchneri Infecting the Tick Ixodes scapularis.

Rachael Hagen, Victoria I Verhoeve, Joseph J Gillespie, Timothy P Driscoll

Open access · goldAbstract readComparative StudyLetter
In one paragraph

Article in Genome biology and evolution, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 36 citations in OpenAlex.

  1. Pooled it
  2. A Compact Closed Genome ofPathogens (Basel, Switzerland) · 2026
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  7. mSphere · 2023
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  9. bioRxiv : the preprint server for biology · 2023
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  10. Metagenome diversity illuminates origins of pathogen effectors.bioRxiv : the preprint server for biology · 2023
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  11. Article
  12. Coinfection of TwoMicrobiology spectrum · 2022
    Article
  13. Comparative Whole Genome Analysis of anPathogens (Basel, Switzerland) · 2022
    Article
  14. Article
  15. Cryptic Genes for Interbacterial Antagonism DistinguishFrontiers in cellular and infection microbiology · 2022
    Article
  16. Article
  17. Review
  18. Review
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Rachael HagenDepartment of Biology, West Virginia University.
Victoria I VerhoeveDepartment of Biology, West Virginia University.
Joseph J GillespieDepartment of Microbiology and Immunology, University of Maryland School of Medicine.
Timothy P DriscollDepartment of Biology, West Virginia University.
West Virginia University · USUniversity of Maryland, Baltimore · US

Funding

MURINE TYPHUS: VECTOR BIOLOGY AND TRANSMISSIONR01AI017828 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI RAHMAN, MOHAMMED SAYEEDUR · 1985 to 2022
$10.2M
Rickettsia-host interface and multiple paths to invasionR01AI126853 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI Mohammed Sayeedur Rahman, Oliver Voss · 2016 to 2026
$6.9M
Characterizing gene family expansion in an atypical bacterial secretion systemR21AI126108 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI GILLESPIE, JOSEPH J, RAHMAN, MOHAMMED SAYEEDUR · 2016 to 2017
$424k
NIAID NIH HHS R01 AI017828NIAID NIH HHS R01 AI126853NIAID NIH HHS R21 AI126108
6 · The paper itself

Abstract

Rickettsia buchneri (formerly Rickettsia endosymbiont of Ixodes scapularis, or REIS) is an obligate intracellular endoparasite of the black-legged tick, the primary vector of Lyme disease in North America. It is noteworthy among the rickettsiae for its relatively large genome (1.8 Mb) and extraordinary proliferation of mobile genetic elements (MGEs), which comprise nearly 35% of its genome. Previous analysis of the R. buchneri genome identified several integrative conjugative elements named Rickettsiales amplified genomic elements (RAGEs); the composition of these RAGEs suggests that continued genomic invasions by MGEs facilitated the proliferation of rickettsial genes related to an intracellular lifestyle. In this study, we compare the genomic diversity at RAGE loci among sequenced rickettsiae that infect three related Ixodes spp., including two strains of R. buchneri and Rickettsia endosymbiont of Ixodes pacificus strain Humboldt, as well as a closely related species R. tamurae infecting Amblyomma testudinarium ticks. We further develop a novel multiplex droplet digital PCR assay and use it to quantify copy number ratios of chromosomal R. buchneri RAGE-A and RAGE-B to the single-copy gene gltA within natural populations of I. scapularis. Our results reveal substantial diversity among R. buchneri at these loci, both within individual ticks as well as in the I. scapularis population at large, demonstrating that genomic rearrangement of MGEs is an active process in these intracellular bacteria.

Indexed as

Gene AmplificationInterspersed Repetitive SequencesAnimalsFemaleGenetic VariationGenome, BacterialIxodesMaleRickettsiaSpecies Specificity

Identifiers

PMID30398619
PMCPMC6300072
OpenAlexW2899782239

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.