Evidence map›Paper›PMID 30397354›Full record

ArticleNature medicine2018

Cancer cells exploit an orphan RNA to drive metastatic progression.

Lisa Fish, Steven Zhang, Johnny X Yu, Bruce Culbertson, Alicia Y Zhou, Andrei Goga, Hani Goodarzi

Registry-linked trialOpen access · greenAbstract read
In one paragraph

Article in Nature medicine, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT05833360 (Prospective Study of oncRNA Stratification of Cancer by Size and Stage), which is not on this map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT05833360 recruitingnot on this mapstarted 2023, after this paper: background citation

Prospective Study of oncRNA Stratification of Cancer by Size and Stage

TypeobservationalSponsorExai Bio Inc.Ran2023 to 2030Enrolled2,400ConditionsCancerArmsExai oncRNA blood test
3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 50 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Current trends and future directions of artificial intelligence in lung cancer diagnosis.Chinese journal of cancer research = Chung-kuo yen cheng yen chiu · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Detection of Early-Stage Colorectal Cancer Using Cell-Free oncRNA Biomarkers and Artificial Intelligence.Clinical cancer research : an official journal of the American Association for Cancer Research · 2025
    Article
  10. Article
  11. Review
  12. Pannexin channels in inflammation and tumorigenesis.Frontiers in cell and developmental biology · 2025
    Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Lisa FishDepartment of Biochemistry & Biophysics, University of California, San Francisco, San Francisco, CA, USA.
Steven ZhangDepartment of Biochemistry & Biophysics, University of California, San Francisco, San Francisco, CA, USA.
Johnny X YuDepartment of Biochemistry & Biophysics, University of California, San Francisco, San Francisco, CA, USA.
Bruce CulbertsonDepartment of Biochemistry & Biophysics, University of California, San Francisco, San Francisco, CA, USA.
Alicia Y ZhouHelen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA.
Andrei GogaHelen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA, USA.
Hani GoodarziDepartment of Biochemistry & Biophysics, University of California, San Francisco, San Francisco, CA, USA. hani.goodarzi@ucsf.edu.ORCID http://orcid.org/0000-0002-9648-8949
University of California, San Francisco · US

Funding

Molecular and Cellular Mechanisms in CancerT32CA108462 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GOGA, ANDREI · 2004 to 2024
$10.4M
Targeted regulation of transcript stability through RNA methylation and intron retentionR01GM123977 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GOODARZI, HANI · 2017 to 2021
$2.0M
Systematic dissection of an aberrant splicing program driving cancer metastasisR00CA194077 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GOODARZI, HANI · 2016 to 2018
$746k
NCI NIH HHS R00 CA194077NCI NIH HHS T32 CA108462NIGMS NIH HHS R01 GM123977
6 · The paper itself

Abstract

Here we performed a systematic search to identify breast-cancer-specific small noncoding RNAs, which we have collectively termed orphan noncoding RNAs (oncRNAs). We subsequently discovered that one of these oncRNAs, which originates from the 3' end of TERC, acts as a regulator of gene expression and is a robust promoter of breast cancer metastasis. This oncRNA, which we have named T3p, exerts its prometastatic effects by acting as an inhibitor of RISC complex activity and increasing the expression of the prometastatic genes NUPR1 and PANX2. Furthermore, we have shown that oncRNAs are present in cancer-cell-derived extracellular vesicles, raising the possibility that these circulating oncRNAs may also have a role in non-cell autonomous disease pathogenesis. Additionally, these circulating oncRNAs present a novel avenue for cancer fingerprinting using liquid biopsies.

Indexed as

Basic Helix-Loop-Helix ProteinsBreast NeoplasmsCarboxypeptidasesCell-Free Nucleic AcidsCell ProliferationConnexinsDisease ProgressionFemaleGene Expression Regulation, NeoplasticHumansMCF-7 CellsMicroRNAsNeoplasm MetastasisNeoplasm ProteinsRNA, Small UntranslatedBasic Helix-Loop-Helix ProteinsCarboxypeptidasesCell-Free Nucleic AcidsConnexinsMicroRNAsNeoplasm ProteinsNUPR1 protein, humanPANX2 protein, humanRNA, Small UntranslatedSCPEP1 protein, human

Identifiers

PMID30397354
PMCPMC6223318
OpenAlexW2898249830

What OpenQuestion holds

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Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.