Evidence map›Paper›PMID 30397274›Full record

ArticleScientific reports2018

Dysregulated gene expression predicts tumor aggressiveness in African-American prostate cancer patients.

Hamdy E A Ali, Pei-Yau Lung, Andrew B Sholl, Shaimaa A Gad, Juan J Bustamante, Hamed I Ali, Johng S Rhim, Gagan Deep, Jinfeng Zhang, Zakaria Y Abd Elmageed

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 37 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Hamdy E A AliDepartment of Pharmaceutical Sciences, Rangel College of Pharmacy, Texas A&M Health Sciences Center, Kingsville, TX, USA.
Pei-Yau LungDepartment of Statistics, Florida State University, Tallahassee, FL, USA.
Andrew B ShollDepartments of Pathology, Tulane University School of Medicine, New Orleans, LA, USA.
Shaimaa A GadDepartment of Pharmaceutical Sciences, Rangel College of Pharmacy, Texas A&M Health Sciences Center, Kingsville, TX, USA.
Juan J BustamanteDepartment of Pharmaceutical Sciences, Rangel College of Pharmacy, Texas A&M Health Sciences Center, Kingsville, TX, USA.
Hamed I AliDepartment of Pharmaceutical Sciences, Rangel College of Pharmacy, Texas A&M Health Sciences Center, Kingsville, TX, USA.
Johng S RhimDepartment of Surgery, Uniformed Services University of the Health Sciences, Bethesda, MD, USA.
Gagan DeepDepartment of Cancer Biology, Wake Forest Baptist Medical Center, Winston-Salem, NC, USA.
Jinfeng ZhangDepartment of Statistics, Florida State University, Tallahassee, FL, USA.
Zakaria Y Abd ElmageedDepartment of Pharmaceutical Sciences, Rangel College of Pharmacy, Texas A&M Health Sciences Center, Kingsville, TX, USA. elmageed@tamhsc.edu.ORCID http://orcid.org/0000-0003-4031-0348
Texas A&M University – Kingsville · USFlorida State University · USAtrium Health Wake Forest Baptist · USTulane University · USUniformed Services University of the Health Sciences · US

Funding

Exosomes Promote Disease Aggressiveness in African American Prostate CancerR21CA199628 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI DEEP, GAGAN · 2015 to 2016
$571k
The role of exRNA in Health Disparity of Prostate CancerR21CA194750 · NCI · TULANE UNIVERSITY OF LOUISIANA · PI ABD ELMAGEED, ZAKARIA · 2015 to 2016
$350k
NCI NIH HHS R21 CA194750NCI NIH HHS R21 CA199628
6 · The paper itself

Abstract

Molecular mechanisms underlying the health disparity of prostate cancer (PCa) have not been fully determined. In this study, we applied bioinformatic approach to identify and validate dysregulated genes associated with tumor aggressiveness in African American (AA) compared to Caucasian American (CA) men with PCa. We retrieved and analyzed microarray data from 619 PCa patients, 412 AA and 207 CA, and we validated these genes in tumor tissues and cell lines by Real-Time PCR, Western blot, immunocytochemistry (ICC) and immunohistochemistry (IHC) analyses. We identified 362 differentially expressed genes in AA men and involved in regulating signaling pathways associated with tumor aggressiveness. In PCa tissues and cells, NKX3.1, APPL2, TPD52, LTC4S, ALDH1A3 and AMD1 transcripts were significantly upregulated (p < 0.05) compared to normal cells. IHC confirmed the overexpression of TPD52 (p = 0.0098) and LTC4S (p < 0.0005) in AA compared to CA men. ICC and Western blot analyses additionally corroborated this observation in PCa cells. These findings suggest that dysregulation of transcripts in PCa may drive the disparity of PCa outcomes and provide new insights into development of new therapeutic agents against aggressive tumors. More studies are warranted to investigate the clinical significance of these dysregulated genes in promoting the oncogenic pathways in AA men.

Indexed as

Gene Expression Regulation, NeoplasticAdultBlack or African AmericanCell Line, TumorHumansMaleMiddle AgedOligonucleotide Array Sequence AnalysisPrognosisProstatic NeoplasmsSignal TransductionWhite People

Identifiers

PMID30397274
PMCPMC6218553
OpenAlexW2899353881

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.