Evidence map›Paper›PMID 30397075›Full record

ArticleMolecular and cellular biology2019

SNW1, a Novel Transcriptional Regulator of the NF-κB Pathway.

Suneer Verma, Paul De Jesus, Sumit K Chanda, Inder M Verma

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
0.9field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
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  5. Covalent targeting of splicing in T cells.Cell chemical biology · 2025
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  10. In Vitro and In Vivo Anti-Arthritic Potential ofMolecules (Basel, Switzerland) · 2022
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  11. Article
  12. Review
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  14. Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Suneer VermaSalk Institute for Biological Studies, La Jolla, California, USA.
Paul De JesusSanford Burnham Prebys Medical Discovery Institute, La Jolla, California, USA.
Sumit K ChandaSanford Burnham Prebys Medical Discovery Institute, La Jolla, California, USA schanda@sbpdiscovery.org imohanv1@gmail.com.
Inder M VermaSalk Institute for Biological Studies, La Jolla, California, USA schanda@sbpdiscovery.org imohanv1@gmail.com.
Salk Institute for Biological Studies · USSanford Burnham Prebys Medical Discovery Institute · US

Funding

Viral Vector Core (VVC)P30CA014195 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI Ye Zheng · 1985 to 2026
$82.8M
Molecular Determinants of TLR TraffickingR01AI105184 · NIAID · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI BARTON, GREGORY M, CHANDA, SUMIT K · 2014 to 2017
$2.7M
NCI NIH HHS P30 CA014195NIAID NIH HHS R01 AI105184
6 · The paper itself

Abstract

The nuclear factor kappa B (NF-κB) family of transcription factors plays a central role in coordinating the expression of genes that control inflammation, immune responses, cell proliferation, and a variety of other biological processes. In an attempt to identify novel regulators of this pathway, we performed whole-genome RNA interference (RNAi) screens in physiologically relevant human macrophages in response to lipopolysaccharide and tumor necrosis factor alpha (TNF-α). The top hit was SNW1, a splicing factor and transcriptional coactivator. SNW1 does not regulate the cytoplasmic components of the NF-κB pathway but complexes with the NF-κB heterodimer in the nucleus for transcriptional activation. We show that SNW1 detaches from its splicing complex (formed with SNRNP200 and SNRNP220) upon NF-κB activation and binds to NF-κB's transcriptional elongation partner p-TEFb. We also show that SNW1 is indispensable for the transcriptional elongation of NF-κB target genes such as the interleukin 8 (IL-8) and TNF genes. SNW1 is a unique protein previously shown to be involved in both splicing and transcription, and in this case, its role involves binding to the NF-κB-p-TEFb complex to facilitate transcriptional elongation of some NF-κB target genes.

Indexed as

Gene Expression RegulationHumansMacrophagesNF-kappa BNuclear Receptor CoactivatorsPositive Transcriptional Elongation Factor BPromoter Regions, GeneticSignal TransductionTHP-1 CellsTranscriptional ActivationTranscription Factor RelATranscription FactorsTranscription, GeneticTumor Necrosis Factor-alphaNF-kappa BNuclear Receptor CoactivatorsPositive Transcriptional Elongation Factor BRELA protein, humanSNW1 protein, humanTranscription Factor RelATranscription FactorsTumor Necrosis Factor-alphaNF-κBRNAi screentranscriptional regulation

Identifiers

PMID30397075
PMCPMC6336138
OpenAlexW2899834500

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.