ArticleMicrobiome2018
Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018.
Abstract readConference Proceedings
In one paragraph
Article in Microbiome, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.
0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
4 citing papers in PubMed.
- Assessment of the pathogen genomics landscape highlights disparities and challenges for effective AMR Surveillance and outbreak response in the East African community.BMC public health · 2024Article
- Article
- A New Whole Genome Culture-Independent Diagnostic Test (WG-CIDT) for Rapid Detection ofFrontiers in microbiology · 2020Article
- Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
36 authors.
Jacquelyn S MeiselCenter for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, USA.
Daniel J NaskoCenter for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, USA.
Brian BrubachCenter for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, USA.
Victoria Cepeda-EspinozaCenter for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, USA.
Jessica ChopykSchool of Public Health, University of Maryland, College Park, College Park, MD, USA.
Héctor Corrada-BravoCenter for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, USA.
Marcus FedarkoCenter for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, USA.
Jay GhuryeCenter for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, USA.
Kiran JavkarCenter for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, USA.
Nathan D OlsonCenter for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, USA.
Nidhi ShahCenter for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, USA.
Sarah M AllardSchool of Public Health, University of Maryland, College Park, College Park, MD, USA.
Adam L BazinetNational Biodefense Analysis and Countermeasures Center, Frederick, MD, USA.
Nicholas H BergmanNational Biodefense Analysis and Countermeasures Center, Frederick, MD, USA.
Alexis BrownBloomberg School of Public Health, Johns Hopkins University, Baltimore, MD, USA.
J Gregory CaporasoThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA.
Sean ConlanNational Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
Jocelyne DiRuggieroDepartment of Biology, Johns Hopkins University, Baltimore, MD, USA.
Samuel P ForryMaterial Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA.
Nur A HasanCenter for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, USA.
Jason KraljMaterial Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA.
Paul M LuethyDepartment of Pathology, University of Maryland School of Medicine, Baltimore, MD, USA.
Donald K MiltonMaryland Institute for Applied Environmental Health, School of Public Health, University of Maryland, College Park, College Park, MD, USA.
Brian D OndovCenter for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, USA.
Sarah PreheimEnvironmental Health and Engineering, Johns Hopkins University, Baltimore, MD, USA.
Shashikala RatnayakeNational Biodefense Analysis and Countermeasures Center, Frederick, MD, USA.
Stephanie M RogersB.Next, In-Q-Tel, Inc., Arlington, VA, USA.
M J RosovitzNational Biodefense Analysis and Countermeasures Center, Frederick, MD, USA.
Eric G SakowskiEnvironmental Health and Engineering, Johns Hopkins University, Baltimore, MD, USA.
Nils Oliver SchliebsDepartment of Computer Science, University of Tübingen, Tübingen, Germany.
Daniel D SommerNational Biodefense Analysis and Countermeasures Center, Frederick, MD, USA.
Krista L TernusSignature Science, LLC, Arlington, VA, USA.
Gherman UritskiyDepartment of Biology, Johns Hopkins University, Baltimore, MD, USA.
Sean X ZhangDivision of Medical Microbiology, Department of Pathology, School of Medicine, Johns Hopkins University, Baltimore, MD, USA.
Mihai PopCenter for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, USA.
Todd J TreangenCenter for Bioinformatics and Computational Biology, University of Maryland, College Park, College Park, MD, USA. treangen@rice.edu.
Funding
Training/Career Development and Education Core and PlansU54CA143925 · NCI · NORTHERN ARIZONA UNIVERSITY · PI JANI CHERI INGRAM, Jason A Wilder · 2009 to 2026
$27.5MUranium as an Environmental Risk Factor for Cancer Among the NavajoU54CA143924 · NCI · UNIVERSITY OF ARIZONA · PI Gloria D. Coronado · 2009 to 2026
$26.7MAlgorithms and Software for the Assembly of Metagenomic DataR01AI100947 · NIAID · UNIV OF MARYLAND, COLLEGE PARK · PI POP, MIHAI · 2013 to 2025
$7.4MIntegrative Visual and Computational Exploratory Analysis of Genomics DataR01GM114267 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI CORRADA BRAVO, HECTOR · 2015 to 2018
$1.8MNCI NIH HHS U54 CA143924NCI NIH HHS U54 CA143925NIAID NIH HHS R01 AI100947NIGMS NIH HHS R01 GM114267
Abstract
The Mid-Atlantic Microbiome Meet-up (M
Indexed as
Biological Warfare AgentsComputational BiologyHigh-Throughput Nucleotide SequencingHumansMetagenomicsMicrobiotaSequence Analysis, DNABiological Warfare AgentsBiodefenseBioinformaticsBiothreatsLongitudinal analysisMetagenomicsMicrobiomePathogen detection
Identifiers
What OpenQuestion holds
Textmetadata
LicenceCC BY
Read underepoch 390
Registered trials
None linked
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.