Evidence map›Paper›PMID 30396369›Full record

ArticleMicrobiome2018

An exploration of Prevotella-rich microbiomes in HIV and men who have sex with men.

Abigail J S Armstrong, Michael Shaffer, Nichole M Nusbacher, Christine Griesmer, Suzanne Fiorillo, Jennifer M Schneider, C Preston Neff, Sam X Li, Andrew P Fontenot, Thomas Campbell and 2 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Microbiome, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 118 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
118citing papers in PubMed, 5 pooled it
6.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

118 citing papers in PubMed, 5 syntheses or guidelines pooled it, 175 citations in OpenAlex.

  1. Pooled it
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  4. The Impact of Human Immunodeficiency Virus Infection on Gut Microbiota α-Diversity: An Individual-level Meta-analysis.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2020
    Pooled it
  5. Gut Microbiome Changes Associated With HIV Infection and Sexual Orientation.Frontiers in cellular and infection microbiology · 2020
    Pooled it
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  11. Microbe on the move:Journal of bacteriology · 2026
    Review
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58 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Abigail J S ArmstrongDepartment of Medicine, University of Colorado Denver, Anschutz Medical Campus, Aurora, CO, USA.
Michael ShafferDepartment of Medicine, University of Colorado Denver, Anschutz Medical Campus, Aurora, CO, USA.
Nichole M NusbacherDepartment of Medicine, University of Colorado Denver, Anschutz Medical Campus, Aurora, CO, USA.
Christine GriesmerDepartment of Surgery, University of Colorado Denver, Anschutz Medical Campus, Aurora, CO, USA.
Suzanne FiorilloDepartment of Surgery, University of Colorado Denver, Anschutz Medical Campus, Aurora, CO, USA.
Jennifer M SchneiderDepartment of Medicine, University of Colorado Denver, Anschutz Medical Campus, Aurora, CO, USA.
C Preston NeffDepartment of Medicine, University of Colorado Denver, Anschutz Medical Campus, Aurora, CO, USA.
Sam X LiDepartment of Medicine, University of Colorado Denver, Anschutz Medical Campus, Aurora, CO, USA.
Andrew P FontenotDepartment of Medicine, University of Colorado Denver, Anschutz Medical Campus, Aurora, CO, USA.
Thomas CampbellDepartment of Surgery, University of Colorado Denver, Anschutz Medical Campus, Aurora, CO, USA.
Brent E PalmerDepartment of Medicine, University of Colorado Denver, Anschutz Medical Campus, Aurora, CO, USA. brent.palmer@ucdenver.edu.
Catherine A LozuponeDepartment of Medicine, University of Colorado Denver, Anschutz Medical Campus, Aurora, CO, USA. catherine.lozupone@ucdenver.edu.
University of Colorado Anschutz Medical Campus · USUniversity of Colorado Denver · US

Funding

NIH Prior Approval Process ProfessionalUL1TR002535 · NCATS · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2018 to 2022
$51.1M
Computational Bioscience Program Training GrantT15LM009451 · NLM · UNIVERSITY OF COLORADO DENVER · PI Katherina Kechris-Mays, Arjun Krishnan · 2007 to 2026
$11.7M
Alterations in Lung Microbiome in Acute and Chronic HIV infectionU01HL098996 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI FONTENOT, ANDREW P. · 2009 to 2013
$3.9M
Interactions of smoking, PD-1 and IL-10 in HIV-associated lung diseaseU01HL121816 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI CAMPBELL, THOMAS B., FONTENOT, ANDREW P. · 2013 to 2017
$3.4M
Diet/gut Microbiome Interaction Influence Inflammatory Disease in HIV PatientsR01DK108366 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI CAMPBELL, THOMAS B., LOZUPONE, CATHERINE · 2015 to 2019
$3.0M
Molecular Pathogenesis of Infectious DiseasesT32AI052066 · NIAID · UNIVERSITY OF COLORADO DENVER · PI VAN DYK, LINDA F. · 2002 to 2022
$2.3M
Factors mediating gut microbiota dysbiosis and metabolic disease in HIV patientsR01DK104047 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI LOZUPONE, CATHERINE, PALMER, BRENT E · 2014 to 2018
$2.1M
HIV-associated gut microbiome affects lung immunity and pneumococcal immune responseR01HL138639 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI CAMPBELL, THOMAS B., LOZUPONE, CATHERINE · 2017 to 2020
$1.9M
Patient-Oriented Research in Immunologic Lung Disease.K24HL102245 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI FONTENOT, ANDREW P. · 2010 to 2020
$1.4M
NCATS NIH HHS UL1 TR002535NHLBI NIH HHS K24 HL102245NHLBI NIH HHS R01 HL138639NHLBI NIH HHS U01 HL098996NHLBI NIH HHS U01 HL121816NIAID NIH HHS T32 AI052066NIDDK NIH HHS R01 DK104047NIDDK NIH HHS R01 DK108366NLM NIH HHS T15 LM009451
6 · The paper itself

Abstract

backgroundGut microbiome characteristics associated with HIV infection are of intense research interest but a deep understanding has been challenged by confounding factors across studied populations. Notably, a Prevotella-rich microbiome described in HIV-infected populations is now understood to be common in men who have sex with men (MSM) regardless of HIV status, but driving factors and potential health implications are unknown.

resultsHere, we further define the MSM-associated gut microbiome and describe compositional differences between the fecal microbiomes of Prevotella-rich MSM and non-MSM that may underlie observed pro-inflammatory properties. Furthermore, we show relatively subtle gut microbiome changes in HIV infection in MSM and women that include an increase in potential pathogens that is ameliorated with antiretroviral therapy (ART). Lastly, using a longitudinal cohort, we describe microbiome changes that happen after ART initiation.

conclusionsThis study provides an in-depth characterization of microbiome differences that occur in a US population infected with HIV and demonstrates the degree to which these differences may be driven by lifestyle factors, ART, and HIV infection itself. Understanding microbiome compositions that occur with sexual behaviors that are high risk for acquiring HIV and untreated and ART-treated HIV infection will guide the investigation of immune and metabolic functional implications to ultimately target the microbiome therapeutically.

Indexed as

Sexual and Gender MinoritiesAnti-Retroviral AgentsFemaleGastrointestinal MicrobiomeHIV InfectionsHumansLife StyleLongitudinal StudiesMalePrevotellaRisk FactorsSexual BehaviorSurveys and QuestionnairesAnti-Retroviral AgentsAntiretroviral therapy (ART)Human immunodeficiency virus (HIV)Men who have sex with men (MSM)Microbiome

Identifiers

PMID30396369
PMCPMC6219090
OpenAlexW2949667594

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.