Evidence map›Paper›PMID 30395198›Full record

ArticleCardiovascular research2019

Foetal hypoxia impacts methylome and transcriptome in developmental programming of heart disease.

Lei Huang, Xin Chen, Chiranjib Dasgupta, Wanqiu Chen, Rui Song, Charles Wang, Lubo Zhang

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Cardiovascular research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 30 citations in OpenAlex.

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  8. mEpigenetics · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Lei HuangDepartment of Basic Sciences, Lawrence D. Longo, MD Center for Perinatal Biology, Loma Linda University School of Medicine, 11234 Anderson Street, Loma Linda, CA, USA.
Xin ChenDepartment of Basic Sciences, Center for Genomics, Loma Linda University School of Medicine, 11234 Anderson Street, Loma Linda, CA, USA.
Chiranjib DasguptaDepartment of Basic Sciences, Lawrence D. Longo, MD Center for Perinatal Biology, Loma Linda University School of Medicine, 11234 Anderson Street, Loma Linda, CA, USA.
Wanqiu ChenDepartment of Basic Sciences, Center for Genomics, Loma Linda University School of Medicine, 11234 Anderson Street, Loma Linda, CA, USA.
Rui SongDepartment of Basic Sciences, Lawrence D. Longo, MD Center for Perinatal Biology, Loma Linda University School of Medicine, 11234 Anderson Street, Loma Linda, CA, USA.
Charles WangDepartment of Basic Sciences, Center for Genomics, Loma Linda University School of Medicine, 11234 Anderson Street, Loma Linda, CA, USA.
Lubo ZhangDepartment of Basic Sciences, Lawrence D. Longo, MD Center for Perinatal Biology, Loma Linda University School of Medicine, 11234 Anderson Street, Loma Linda, CA, USA.
Loma Linda University · US

Funding

Uterine Vascular Adaptation to Pregnancy and Chronic HypoxiaP01HD083132 · NICHD · LOMA LINDA UNIVERSITY · PI DUCSAY, CHARLES A · 2016 to 2020
$6.3M
Developmental Programming of Ischemic-Sensitive Phenotype in the HeartR01HL118861 · NHLBI · LOMA LINDA UNIVERSITY · PI ZHANG, LUBO · 2014 to 2017
$1.8M
Uterine Arterial Spontaneous Transient Outward Currents in PregnancyR01HL137649 · NHLBI · LOMA LINDA UNIVERSITY · PI ZHANG, LUBO · 2017 to 2020
$1.6M
High Throughput DNA SequencerS10OD019960 · OD · LOMA LINDA UNIVERSITY · PI WANG, CHARLES · 2015 to 2015
$272k
NHLBI NIH HHS R01 HL118861NHLBI NIH HHS R01 HL137649NICHD NIH HHS P01 HD083132NIH HHS S10 OD019960
6 · The paper itself

Abstract

aimsAntenatal hypoxia negatively impacts foetal heart development, and increases the risk of heart disease later in life. The molecular mechanisms remain largely elusive. Here, we conducted a genome-wide analysis to study the impact of antenatal hypoxia on DNA methylome and transcriptome profiling in foetal and adult offspring hearts. METHODS AND

resultsPregnant rats were treated with normoxia or hypoxia (10.5% O2) from Day 15 to Day 21 of gestation. Hearts were isolated from near-term foetuses and 5-month-old male and female offsprings, and DNA methylome and RNA-seq were performed. Methylome data shows a sharp dip in CpG methylation centred at the transcription start site (TSS). CpG islands (CGIs) and CpG island shores (CGSs) within 10 kb upstream of the TSS are hypomethylated, compared with CGIs and CGSs within gene bodies. Combining transcriptome, data indicate an inverse relation between gene expression and CpG methylation around the TSS. Of interest, antenatal hypoxia induces opposite changes in methylation patterns in foetal and adult hearts, with hypermethylation in the foetus and hypomethylation in the adult. Also, there is significant sex dimorphism of changes in gene expression patterns in the adult offspring heart. Notably, pathway analysis indicates that enrichment of inflammation-related pathways are significantly greater in the adult male heart than those in the female heart.

conclusionOur study provides an initial framework and new insights into foetal hypoxia-mediated epigenetic programming of pro-inflammatory phenotype in the heart development, linking antenatal stress, and developmental programming of heart vulnerability to disease later in life.

Indexed as

DNA MethylationEpigenomeTranscriptomeAge FactorsAnimalsCpG IslandsDisease Models, AnimalFemaleFetal HypoxiaGene Expression Regulation, DevelopmentalGenetic Predisposition to DiseaseGestational AgeHeart DiseasesMalePhenotypePregnancyAntenatal hypoxiaHeartInflammationMethylomeTranscriptome

Identifiers

PMID30395198
PMCPMC6587923
OpenAlexW2900014413

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.