Evidence map›Paper›PMID 30394383›Full record

ArticleJournal of visualized experiments : JoVE2018

Cell Cycle Analysis in the C. elegans Germline with the Thymidine Analog EdU.

Zuzana Kocsisova, Ariz Mohammad, Kerry Kornfeld, Tim Schedl

Abstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Single-tissue proteomics inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. Article
  10. Hand Dissection of Caenorhabditis elegans Intestines.Journal of visualized experiments : JoVE · 2022
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Biology of theGenetics · 2019
    Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Zuzana KocsisovaDepartment of Developmental Biology, Washington University School of Medicine, St. Louis, Missouri; Department of Genetics, Washington University School of Medicine, St. Louis, Missouri.
Ariz MohammadDepartment of Genetics, Washington University School of Medicine, St. Louis, Missouri.
Kerry KornfeldDepartment of Developmental Biology, Washington University School of Medicine, St. Louis, Missouri.
Tim SchedlDepartment of Genetics, Washington University School of Medicine, St. Louis, Missouri; ts@wustl.edu.

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
Stem cell versus meiotic fate decision in C. elegansR01GM100756 · NIGMS · WASHINGTON UNIVERSITY · PI SCHEDL, TIM · 2012 to 2023
$4.2M
IDENTIFICATION OF DRUGS THAT DELAY AGINGR01AG026561 · NIA · WASHINGTON UNIVERSITY · PI KORNFELD, KERRY · 2006 to 2017
$3.3M
Identification of drugs that delay agingR56AG026561 · NIA · WASHINGTON UNIVERSITY · PI KORNFELD, KERRY · 2018 to 2018
$506k
NIA NIH HHS R01 AG026561NIA NIH HHS R56 AG026561NIGMS NIH HHS R01 GM100756NIH HHS P40 OD010440
6 · The paper itself

Abstract

Cell cycle analysis in eukaryotes frequently utilizes chromosome morphology, expression and/or localization of gene products required for various phases of the cell cycle, or the incorporation of nucleoside analogs. During S-phase, DNA polymerases incorporate thymidine analogs such as EdU or BrdU into chromosomal DNA, marking the cells for analysis. For C. elegans, the nucleoside analog EdU is fed to the worms during regular culture and is compatible with immunofluorescent techniques. The germline of C. elegans is a powerful model system for the studies of signaling pathways, stem cells, meiosis, and cell cycle because it is transparent, genetically facile, and meiotic prophase and cellular differentiation/gametogenesis occur in a linear assembly-like fashion. These features make EdU a great tool to study dynamic aspects of mitotically cycling cells and germline development. This protocol describes how to successfully prepare EdU bacteria, feed them to wild-type C. elegans hermaphrodites, dissect the hermaphrodite gonad, stain for EdU incorporation into DNA, stain with antibodies to detect various cell cycle and developmental markers, image the gonad and analyze the results. The protocol describes the variations in the method and analysis for the measurement of S-phase index, M-phase index, G2 duration, cell cycle duration, rate of meiotic entry, and rate of meiotic prophase progression. This method can be adapted to study the cell cycle or cell history in other tissues, stages, genetic backgrounds, and physiological conditions.

Indexed as

AnimalsCaenorhabditis elegansCell CycleGerm CellsSignal TransductionThymidineThymidine

Identifiers

PMID30394383
PMCPMC6235580

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.