Evidence map›Paper›PMID 30392940›Full record

ArticleEnvironment international2018

Urinary DNA adductomics - A novel approach for exposomics.

Marcus S Cooke, Chiung-Wen Hu, Yuan-Jhe Chang, Mu-Rong Chao

Abstract read
In one paragraph

Article in Environment international, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. A Comprehensive Database for DNA Adductomics.Frontiers in chemistry · 2022
    Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Marcus S CookeOxidative Stress Group, Department of Environmental Health Sciences, Florida International University, Miami, FL 33199, USA; Biomolecular Sciences Institute, Florida International University, Miami, FL 33199, USA. Electronic address: mcooke@fiu.edu.
Chiung-Wen HuOxidative Stress Group, Department of Environmental Health Sciences, Florida International University, Miami, FL 33199, USA; Department of Public Health, Chung Shan Medical University, Taichung 402, Taiwan.
Yuan-Jhe ChangDepartment of Occupational Safety and Health, Chung Shan Medical University, Taichung 402, Taiwan.
Mu-Rong ChaoOxidative Stress Group, Department of Environmental Health Sciences, Florida International University, Miami, FL 33199, USA; Department of Occupational Safety and Health, Chung Shan Medical University, Taichung 402, Taiwan; Department of Occupational Medicine, Chung Shan Medical University Hospital, Taichung 402, Taiwan. Electronic address: mrchao@csmu.edu.tw.

Funding

Urinary DNA Adductomics for the Assessment of Exposure to Cancer Risk FactorsR01ES030557 · NIEHS · UNIVERSITY OF SOUTH FLORIDA · PI COOKE, MARCUS STANLEY, HU, CHIUNG-WEN · 2019 to 2023
$1.7M
Genomic instability, susceptibility to oxidative stress and cellular senescenceR15ES027196 · NIEHS · FLORIDA INTERNATIONAL UNIVERSITY · PI COOKE, MARCUS STANLEY · 2017 to 2017
$366k
NIEHS NIH HHS R01 ES030557NIEHS NIH HHS R15 ES027196
6 · The paper itself

Abstract

The exposome is a concept that encompasses the totality of internal and external environmental exposures, from conception onwards. Evaluation of the exposome, across the lifecourse represents a significant challenge, e.g., methods/technology may simply not exist to comprehensively assess all exposures, or they may not be applicable to human populations, or may have insufficient sensitivity. Cellular DNA adductomics aims to determine the totality of DNA adducts in the cellular genome. However, application to human populations requires the necessarily invasive sampling of tissue, to obtain sufficient DNA for sensitive analysis, which can represent a logistical and IRB challenge, particularly when investigating vulnerable populations. To circumvent this, we recently applied DNA adductomics to urine, detecting a range of expected and unexpected 2'-deoxyribonucleoside DNA adducts. However, base excision repair, the main DNA repair pathway for non-bulky DNA adducts, and processes such as spontaneous depurination, generate nucleobase adducts. Herein we propose a strategy to simultaneously assess 2'-deoxyribonucleoside and nucleobase adducts, using a widely used mass spectrometic platform (i.e., triple quadrupole tandem mass spectrometry). This will provide a much needed DNA adductomic approach for non-invasively, biomonitoring environmental exposures, through assessing the totality of DNA adducts; contributing to the evaluation of the exposome, across the life-course.

Indexed as

Computational BiologyDNA AdductsEnvironmental ExposureHumansTandem Mass SpectrometryDNA AdductsAdductomicsDNA damageDNA repairEnvironmental exposureExposomeMass spectrometry

Identifiers

PMID30392940
PMCPMC6279464

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.