Evidence map›Paper›PMID 30391505›Full record

ArticleNeuropharmacology2019

Computation-guided analysis of paroxetine binding to hSERT reveals functionally important structural elements and dynamics.

Ara M Abramyan, Rachel D Slack, Sitaram Meena, Bruce A Davis, Amy Hauck Newman, Satinder K Singh, Lei Shi

Open access · greenAbstract read
In one paragraph

Article in Neuropharmacology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 27 citations in OpenAlex.

  1. Alchemical Free Energy Calculations on Membrane-Associated Proteins.Journal of chemical theory and computation · 2023
    Review
  2. Dynamic extracellular vestibule of human SERT: Unveiling druggable potential with high-affinity allosteric inhibitors.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  3. Unravelling the Turn-On Fluorescence Mechanism of a Fluorescein-Based Probe in GABAAngewandte Chemie (Weinheim an der Bergstrasse, Germany) · 2022
    Article
  4. Unravelling the Turn-On Fluorescence Mechanism of a Fluorescein-Based Probe in GABAAngewandte Chemie (International ed. in English) · 2022
    Article
  5. Article
  6. Article
  7. Article
  8. Paroxetine-Overview of the Molecular Mechanisms of Action.International journal of molecular sciences · 2021
    Review
  9. Article
  10. Article
  11. The allosteric mechanism of substrate-specific transport in SLC6 is mediated by a volumetric sensor.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  12. Review
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Ara M AbramyanMolecular Targets and Medications Discovery Branch, National Institute on Drug Abuse, Intramural Research Program, National Institutes of Health, 333 Cassell Drive, Baltimore, MD, 21224, United States.
Rachel D SlackMolecular Targets and Medications Discovery Branch, National Institute on Drug Abuse, Intramural Research Program, National Institutes of Health, 333 Cassell Drive, Baltimore, MD, 21224, United States.
Sitaram MeenaDepartment of Cellular and Molecular Physiology, Yale University School of Medicine, 333 Cedar Street, New Haven, CT, 06520, United States.
Bruce A DavisDepartment of Cellular and Molecular Physiology, Yale University School of Medicine, 333 Cedar Street, New Haven, CT, 06520, United States.
Amy Hauck NewmanMolecular Targets and Medications Discovery Branch, National Institute on Drug Abuse, Intramural Research Program, National Institutes of Health, 333 Cassell Drive, Baltimore, MD, 21224, United States. Electronic address: anewman@intra.nida.nih.gov.
Satinder K SinghDepartment of Cellular and Molecular Physiology, Yale University School of Medicine, 333 Cedar Street, New Haven, CT, 06520, United States. Electronic address: satinder.k.singh@yale.edu.
Lei ShiMolecular Targets and Medications Discovery Branch, National Institute on Drug Abuse, Intramural Research Program, National Institutes of Health, 333 Cassell Drive, Baltimore, MD, 21224, United States. Electronic address: lei.shi2@nih.gov.
National Institutes of Health · USYale University · US

Funding

Structural basis for the functions of dopamine receptors, neurotransmitter transporters, and sigma 1 receptorZIADA000606 · NIDA · NATIONAL INSTITUTE ON DRUG ABUSE · PI SHI, LEI · 2015 to 2025
$20.5M
Structure and Function of a Serotonin TransporterR01MH100688 · NIMH · YALE UNIVERSITY · PI SINGH, SATINDER KAUR · 2014 to 2018
$2.9M
Monoamine Transporter NanoprobesZIADA000610 · NIDA · NATIONAL INSTITUTE ON DRUG ABUSE · PI NEWMAN, AMY HAUCK · 2016 to 2020
$2.5M
Transport and Inhibition in a Biogenic Amine TransporterR00MH083050 · NIMH · YALE UNIVERSITY · PI SINGH, SATINDER KAUR · 2010 to 2012
$736k
Intramural NIH HHS ZIA DA000606Intramural NIH HHS ZIA DA000610NIMH NIH HHS R00 MH083050NIMH NIH HHS R01 MH100688
6 · The paper itself

Abstract

The serotonin transporter (SERT) is one of the primary targets for medications to treat neuropsychiatric disorders and functions by exploiting pre-existing ion gradients of Na

Indexed as

Biological Transport, ActiveEntropyHumansKineticsModels, MolecularMolecular Dynamics SimulationMutationParoxetineProtein BindingProtein ConformationSelective Serotonin Reuptake InhibitorsSerotonin Plasma Membrane Transport ProteinsParoxetineSelective Serotonin Reuptake InhibitorsSerotonin Plasma Membrane Transport ProteinsSLC6A4 protein, humanConformational thermostabilizationMolecular dynamics simulationsParoxetineSelective serotonin reuptake inhibitorsSerotonin transporterX-ray crystallography

Identifiers

PMID30391505
PMCPMC6494725
OpenAlexW2899441829

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.