Evidence map›Paper›PMID 30391364›Full record

ArticlePapillomavirus research (Amsterdam, Netherlands)2018

Human papillomavirus in head and neck squamous cell carcinomas in a South African cohort.

Tumelo R Sekee, Felicity J Burt, Dominique Goedhals, Jacqueline Goedhals, Yuri Munsamy, Riaz Y Seedat

Open access · goldAbstract read
In one paragraph

Article in Papillomavirus research (Amsterdam, Netherlands), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 5 pooled it
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 5 syntheses or guidelines pooled it, 31 citations in OpenAlex.

  1. Pooled it
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  6. Article
  7. Article
  8. Epidemiology and demographics of head and neck cancer in Africa: A scoping review.African journal of primary health care & family medicine · 2023
    Article
  9. Article
  10. Epidemiology of HPV Related Malignancies.Seminars in radiation oncology · 2021
    Review
  11. Article
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Tumelo R SekeeDivision of Virology, Faculty of Health Sciences, University of the Free State, Bloemfontein, South Africa.
Felicity J BurtDivision of Virology, Faculty of Health Sciences, University of the Free State, Bloemfontein, South Africa; Division of Virology, National Health Laboratory Service Universitas, Bloemfontein, South Africa.
Dominique GoedhalsDivision of Virology, Faculty of Health Sciences, University of the Free State, Bloemfontein, South Africa; Division of Virology, National Health Laboratory Service Universitas, Bloemfontein, South Africa.
Jacqueline GoedhalsDepartment of Anatomical Pathology, Faculty of Health Sciences, University of the Free State, Bloemfontein, South Africa; Department of Anatomical Pathology, National Health Laboratory Service Universitas, Bloemfontein, South Africa.
Yuri MunsamyDivision of Virology, Faculty of Health Sciences, University of the Free State, Bloemfontein, South Africa.
Riaz Y SeedatDepartment of Otorhinolaryngology, Faculty of Health Sciences, University of the Free State, Bloemfontein, South Africa; Department of Otorhinolaryngology, Universitas Academic Hospital, Bloemfontein, South Africa. Electronic address: SeedatRY@ufs.ac.za.
National Health Laboratory Service · ZAUniversity of the Free State · ZA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMost tumours of the head and neck are attributable to smoking and alcohol use, but an increasing proportion of head and neck tumours are caused by human papillomaviruses (HPVs). The aim of this study was to use in house molecular assays to detect and genotype HPV in biopsies from patients with histologically confirmed head and neck squamous cell carcinomas. In addition, the results were compared with p16 immunohistochemistry staining, which has been described as a potential marker for HPV infection.

methodsBiopsies of squamous cell carcinomas of the oropharynx, nasopharynx, larynx and hypopharynx from 112 South African patients were screened using three PCR assays targeting the L1 and E6 regions of HPV and p16 immunohistochemical staining. RESULTS AND

conclusionHPV was identified in 7 (6.3%) tumours, while 22 (19.6%) had positive p16 immunohistochemical staining. There was concordance between the results obtained using the three PCR assays. There was substantial agreement between the results of molecular tests and p16 immunohistochemistry for hypopharyngeal carcinomas, but only fair agreement for laryngeal and oropharyngeal carcinomas.

Indexed as

GenotypeAdultAgedAged, 80 and overBiopsyFemaleGenotyping TechniquesHistocytochemistryHumansImmunohistochemistryMaleMiddle AgedPapillomaviridaePapillomavirus InfectionsPolymerase Chain ReactionPrevalenceHuman papillomavirusHypopharyngeal carcinomaLaryngeal carcinomaNasopharyngeal carcinomaOropharyngeal carcinoma

Identifiers

PMID30391364
PMCPMC6232649
OpenAlexW2899449721

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.